| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,767,445 | (C)7→8 | intergenic (+90/‑265) | rnlB → / → yfjP | CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,767,438 | 1 | . | C | 83.7% | 121.8 / 16.8 | 43 | intergenic (+83/‑272) | rnlB/yfjP | CP4‑57 prophage, uncharacterized protein/CP4‑57 prophage, 50S ribosome‑binding GTPase family protein |
| Reads supporting (aligned to +/- strand): ref base . (6/1); new base C (15/21); total (21/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.59e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATG > NC_000913/2767304‑2767570 | ctctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑cc‑c < 2:1052085/139‑1 (MQ=255) tctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑aaacaac > 1:1437324/1‑134 (MQ=255) tctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑cc‑cc > 1:1361550/1‑139 (MQ=255) ctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑cc‑c > 1:578686/1‑137 (MQ=255) ctGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑cc‑c < 2:578686/137‑1 (MQ=255) tGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑c‑cc‑cccc < 2:390945/139‑1 (MQ=255) gTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTcaca < 2:1361550/139‑1 (MQ=255) gTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTcaca < 1:668389/139‑1 (MQ=255) tcCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACg < 1:291607/139‑1 (MQ=255) cccGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGt > 1:522198/1‑139 (MQ=255) ccGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTc < 2:522198/139‑1 (MQ=255) atgatgTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑CC‑CACCttaacaaagtcatg > 1:146008/1‑126 (MQ=255) gtaaGTCCTGTGCATTGATTTTTGAAACTCTTTTTTCTAAACGAACCAGTAGAGAAGTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAac < 1:89838/137‑1 (MQ=255) ccAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAac < 1:1306764/139‑1 (MQ=255) tCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 1:115732/139‑1 (MQ=255) tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTcaca < 1:13524/101‑1 (MQ=255) tttGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTcaca > 2:13524/1‑101 (MQ=255) cttcttTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 1:470331/120‑1 (MQ=255) cttcttTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTccc > 2:470331/1‑120 (MQ=255) ccAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTaaa < 2:27857/139‑1 (MQ=255) ccAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTaaa < 2:146008/139‑1 (MQ=255) aGTATAGAAATCGCCCTTTTGGCATGAGATTAACTTGTCCAATATGATCAAATAGCAGT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACt < 1:868573/139‑1 (MQ=255) aaTTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAA‑C‑CC‑CCCCACACAACGTCCTTCATATGGAAAAAGTATTCCCCTGTACACCCAAGACTAAATTCCCCCTCCTGAAAACTTATCaat > 1:27857/1‑139 (MQ=255) aaTTCGCCCTTTTGGCATGATATTAACATGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTTACAACGTTCGGCATAGGATATACGTTTTTCCCTGTACACCCAAGACAAAATTTAACCCTCTGCAAACTTCTCact > 1:877744/1‑137 (MQ=255) cGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑CACA‑CCCCGAACAACGTCCTGCATAGGGAAACCGTTTTCCCCTATGCACCCACGACTCACTTTTACCCCCTCATAACTTCCCaatactc > 1:300044/1‑136 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATTAAA‑C‑CC‑ACCCTGACAACGGCCCGCATCGCGAACACCCTTTACCCTGTGCACACATGATTAAATTTCCCCCCCTTTAAAcctacaaaaaatgt > 2:129958/1‑126 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGt > 1:1141436/1‑66 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGt < 2:1141436/66‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGa < 2:865812/78‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGa > 1:865812/1‑78 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCAc < 1:750583/102‑1 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCAc > 2:750583/1‑102 (MQ=255) gCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑CACC‑CACCTTACAACGTATTCCATAGGGCACACGTTTTTCCATATGCCCCCACGACGAAATTTCCCCCCCTTTAAACTTCTCAATAATGt > 2:678670/1‑139 (MQ=255) gTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTccc > 1:231463/1‑66 (MQ=255) gTCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 2:231463/66‑1 (MQ=255) tCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCCCACCGACCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAACTTACTCCCCTTTAAACTTCTCACTAATGTCACCAATTTTCTGGAAATACTatta > 1:911068/1‑137 (MQ=255) tCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACACCGTCCTGCATAGGGAACACGTTTTCCCCTGTGCAACCACGACTAAAGTTCCACCCCTTCAAACTTCTCAATAATGTCACCAATTTTCTGGAAACTCTatga > 2:1272307/1‑139 (MQ=255) tCCAATATGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTTCACCCACGACTAAATTTCCCCCCCTTTAAACCTCTCAATAATTTCACCAATTTTCTGGAAATCCTatca > 1:462710/1‑137 (MQ=255) tCCAATATGATCAAATAGCATT‑AA‑C‑CCACCCCGCACAACGTCCTGCATAGGGAACACGCTTATCACTGTGCACCACTGAAAAAATTTCACCCCCTTTAAACTTACCAATAATGACATCCATTTTCTGGAAAGCATatga > 1:161808/1‑139 (MQ=255) tatGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTccc < 1:570321/60‑1 (MQ=255) tatGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTccc > 2:570321/1‑60 (MQ=255) atGATCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCATCAATTTTCTGGAAATCCTATGATGCCtt < 2:911068/139‑1 (MQ=255) aTCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACt < 2:445433/72‑1 (MQ=255) aTCAAATAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACt > 1:445433/1‑72 (MQ=255) tAGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGAAACACGTCTTCCCCTGTGCACCCACGACTAAATATCTCCCCCTCTAAAGTTCTCAATTATTTCACCAATTTTCTGGAAATCTTATGACTCCTTTCCCGCTat > 2:314989/1‑138 (MQ=255) aGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCTCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTaaa < 2:877744/139‑1 (MQ=255) aGCATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTaaa < 2:1437324/139‑1 (MQ=255) cATT‑AACC‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACTACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAACTCCTATGATGCCTTTCCCGGTAAATg > 2:707287/1‑139 (MQ=255) tt‑AA‑C‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc > 2:408319/1‑69 (MQ=255) tt‑AA‑C‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTccc < 1:408319/69‑1 (MQ=255) | CTCTGTTTTGTCTCCCGATGATGTACGCCAAGTCCTGTCAATGGATTTTTGAAACTCTTCTTTCTAAACGAACCAGTATAGAATTCGCCCTTTTGGCATGATATTAACTTGTCCAATATGATCAAATAGCATT‑AA‑C‑CC‑CCCCTCACAACGTCCTGCATAGGGAACACGTTTTCCCCTGTGCACCCACGACTAAATTTCCCCCCCTTTAAACTTCTCAATAATGTCACCAATTTTCTGGAAATCCTATGATGCCTTTCCCGGTAAATG > NC_000913/2767304‑2767570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |