| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,979,943 | C→T | A308V (GCT→GTT) *231* (TAG→TAA) |
lysR → ygeA ← |
transcriptional activator of lysA, autorepressor Asp/Glu_racemase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,979,943 | 0 | C | T | 100.0% | 132.5 / NA | 42 | A308V (GCT→GTT) *231* (TAG→TAA) | lysR ygeA | transcriptional activator of lysA, autorepressor Asp/Glu_racemase family protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/21); total (21/21) | |||||||||||
GCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGCTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCAAAAATGACGCCCTGTGCGCCCTG > NC_000913/2979810‑2980074 | gCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGa < 1:409952/139‑1 (MQ=255) cGGTTCCGTTCACCGTCGGCCTGTTCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCATGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTATTTTTGTCGTCAGTTACGa < 2:701064/139‑1 (MQ=255) cGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGAc > 2:702638/1‑139 (MQ=255) gTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAg < 2:766492/139‑1 (MQ=255) gTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAg > 2:760931/1‑139 (MQ=255) ttCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATaaa > 2:894547/1‑139 (MQ=255) tCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACa > 2:793318/1‑139 (MQ=255) gCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTAGCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCa > 2:634834/1‑139 (MQ=255) gCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCa > 2:448569/1‑139 (MQ=255) cccccTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCAt > 2:550035/1‑139 (MQ=255) ccccTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATg > 1:413016/1‑139 (MQ=255) tGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATc > 1:708086/1‑139 (MQ=255) tGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATc > 1:50245/1‑139 (MQ=255) cccGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCgg > 2:240407/1‑139 (MQ=255) tcaGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCaaa < 1:144167/139‑1 (MQ=255) caGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAac < 2:50245/139‑1 (MQ=255) gcgcTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAacac < 2:708086/139‑1 (MQ=255) gcgcTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAacac < 1:448569/139‑1 (MQ=255) tGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACa < 2:148966/86‑1 (MQ=255) tGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACa > 1:148966/1‑86 (MQ=255) gCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACt < 1:801603/139‑1 (MQ=255) tttAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTgcg < 1:634834/139‑1 (MQ=255) ttAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTgcgc > 1:382033/1‑139 (MQ=255) aaGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGt < 1:777926/139‑1 (MQ=255) ggTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTCTGTCGTCAGTTACGACAGCATAAAAGCGACa > 1:179778/1‑67 (MQ=255) ggTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTCTGTCGTCAGTTACGACAGCATAAAAGCGACa < 2:179778/67‑1 (MQ=255) aaaCTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCt > 2:33459/1‑66 (MQ=255) aaaCTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCt < 1:33459/66‑1 (MQ=255) aCTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCcgcg > 1:813803/1‑81 (MQ=255) aCTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCcgcg < 2:813803/81‑1 (MQ=255) aCTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCGAACACATGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGc < 2:537683/139‑1 (MQ=255) gTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATc < 1:683760/58‑1 (MQ=255) gTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATc > 2:683760/1‑58 (MQ=255) tCACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCa > 1:498116/1‑139 (MQ=255) cACTTCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCaa < 2:498116/139‑1 (MQ=255) ttCTCTTGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAACCaaaaa > 2:508087/1‑139 (MQ=255) tGACGCTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCAAAAATGACGc < 1:760931/139‑1 (MQ=255) cTA‑TTTTGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCAAAAATGACGCCCtgt < 1:659122/139‑1 (MQ=255) ttttGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAacac < 2:916041/69‑1 (MQ=255) ttttGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAacac > 1:916041/1‑69 (MQ=255) ttttGTCGTCAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCAAAAATGACGCCCTGTgcg < 1:133700/139‑1 (MQ=255) tcgtcAGTTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCAAAAATGACGCCCTGTGCGCCCTg > 1:692274/1‑139 (MQ=255) | GCGGTTCCGTTCACCGTCAGCCTGATCCGCCCCCTGCACCGCCCGTCATCAGCGCTGGTTCAGGCGTTTAGTGGGCATTTACAAGCGGGGTTACCGAAACTGGTCACTTCTCTTGACGCTA‑TTTTGTCGTCAGCTACGACAGCATAAAAGCGACAGCATCCTCGGCATGGATCGCCGCGGTATCAAACACAGGCAAAACACTGCGCTCTTCTGGCACCAGTAAACCAATTTCTGTGCAGCCAAAAATGACGCCCTGTGCGCCCTG > NC_000913/2979810‑2980074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |