Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,288,561	(C)7→6	pseudogene (354/2525 nt)	yejO ←	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,288,555	0	C	.	100.0%	323.4 / NA	77	pseudogene (360/2525 nt)	yejO	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (39/38);  total (39/38)

GACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288420‑2288688                                                                                                                                          |                                                                                                                                      gaCGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGcccc                                                                                                                                    <  2:915022/139‑1 (MQ=255)      tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGccccccatc                                                                                                                               >  2:454412/1‑136 (MQ=255)               aaTACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAAc                                                                                                                     >  2:823879/1‑139 (MQ=255)                         tGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  1:265829/1‑139 (MQ=255)                          ggCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  1:823879/139‑1 (MQ=255)                                      tgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  1:454412/139‑1 (MQ=255)                                                 cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCa                                                                                                                       <  2:211735/103‑1 (MQ=255)                                                 cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCa                                                                                                                       >  1:211735/1‑103 (MQ=255)                                                  aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGt                                                                                          >  2:871300/1‑131 (MQ=255)                                                  aCCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGt                                                                                          <  1:871300/131‑1 (MQ=255)                                                    cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  1:1322635/1‑112 (MQ=255)                                                    cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:1322635/112‑1 (MQ=255)                                                       cTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcg                                                                             >  2:1535168/1‑139 (MQ=255)                                                       cTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcg                                                                             >  2:984926/1‑139 (MQ=255)                                                             tCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  1:678229/139‑1 (MQ=255)                                                                    tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            >  1:878902/1‑111 (MQ=255)                                                                    tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            <  2:878902/111‑1 (MQ=255)                                                                    tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt                                                                         >  1:276969/1‑130 (MQ=255)                                                                    tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt                                                                         <  2:276969/130‑1 (MQ=255)                                                                    tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTa                                                                >  2:1635099/1‑139 (MQ=255)                                                                    tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTa                                                                >  1:1147140/1‑139 (MQ=255)                                                                    tACCGCAAAAGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCCACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTa                                                                <  1:984926/139‑1 (MQ=255)                                                                     aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGccccccatc                                                                                                                               <  2:745081/76‑4 (MQ=255)                                                                     aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGccccccatc                                                                                                                               >  1:745081/1‑73 (MQ=255)                                                                     aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               >  2:1065345/1‑139 (MQ=255)                                                                     aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  2:1147140/139‑1 (MQ=255)                                                                       cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  2:788413/1‑95 (MQ=255)                                                                       cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  1:788413/95‑1 (MQ=255)                                                                       cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  2:1462227/121‑1 (MQ=255)                                                                       cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               >  1:1462227/1‑121 (MQ=255)                                                                       cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:1535168/139‑1 (MQ=255)                                                                         caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcaca                                                           >  1:292292/1‑139 (MQ=255)                                                                            atgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCACTCGCTGCGCCATAACCCTGTAGCACACCa                                                        <  1:1323125/139‑1 (MQ=255)                                                                             tgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGccccccatct                                                                                                                              >  2:168474/1‑65 (MQ=255)                                                                             tgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGccccccatct                                                                                                                              <  1:168474/69‑5 (MQ=255)                                                                                 aatCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:412242/83‑1 (MQ=255)                                                                                 aatCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  1:412242/1‑83 (MQ=255)                                                                                       cccTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                                                          >  2:126738/1‑110 (MQ=255)                                                                                       cccTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa                                                                          <  1:126738/110‑1 (MQ=255)                                                                                        ccTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTa                                            <  1:1065345/139‑1 (MQ=255)                                                                                               aaCCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc                                                                    >  2:550651/1‑108 (MQ=255)                                                                                               aaCCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc                                                                    <  1:550651/108‑1 (MQ=255)                                                                                                    ccAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  1:859091/77‑1 (MQ=255)                                                                                                    ccAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              >  2:859091/1‑77 (MQ=255)                                                                                                    ccAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc                                >  1:862774/1‑139 (MQ=255)                                                                                                     cAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  1:937546/109‑1 (MQ=255)                                                                                                     cAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             >  2:937546/1‑109 (MQ=255)                                                                                                     cAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcg                               >  2:217964/1‑139 (MQ=255)                                                                                                      agtagtCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               >  1:467430/1‑90 (MQ=255)                                                                                                      agtagtCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg                                                                               <  2:467430/90‑1 (MQ=255)                                                                                                      agtagtCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgc                              >  2:1432928/1‑139 (MQ=255)                                                                                                      agtagtCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgc                              >  1:1456580/1‑139 (MQ=255)                                                                                                          gtCCT‑‑CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  1:217964/139‑1 (MQ=255)                                                                                                            cct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc                                               <  2:651243/116‑1 (MQ=255)                                                                                                            cct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc                                               >  1:651243/1‑116 (MQ=255)                                                                                                            cct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          <  1:373802/137‑1 (MQ=255)                                                                                                            cct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCa                          >  2:373802/1‑137 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcccgcc                                                                                                      <  2:891217/60‑1 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcccgcc                                                                                                      >  1:891217/1‑60 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            <  1:1545003/70‑1 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            >  2:1545003/1‑70 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  2:758778/1‑139 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  1:870990/1‑139 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  1:1281070/1‑139 (MQ=255)                                                                                                             ct‑‑ccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCAccc                       >  2:1593758/1‑139 (MQ=255)                                                                                                                 cccTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          >  2:1275904/1‑54 (MQ=255)                                                                                                                 cccTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  1:1275904/54‑1 (MQ=39)                                                                                                                 cccTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     >  2:1073348/1‑139 (MQ=255)                                                                                                                  ccTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc                                               >  2:1342435/1‑112 (MQ=255)                                                                                                                  ccTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc                                               <  1:1342435/112‑1 (MQ=255)                                                                                                                      ttCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:1283138/48‑1 (MQ=39)                                                                                                                      ttCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  1:1283138/1‑48 (MQ=39)                                                                                                                       tCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               <  2:265829/139‑1 (MQ=255)                                                                                                                            aGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTaa                                                                                                 >  2:1498748/1‑52 (MQ=255)                                                                                                                            aGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTaa                                                                                                 <  1:1498748/52‑1 (MQ=255)                                                                                                                              cGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     >  1:761056/1‑126 (MQ=255)                                                                                                                              cGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     <  2:761056/126‑1 (MQ=255)                                                                                                                                    aGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:862774/139‑1 (MQ=255)                                                                                                                                    aGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:1281070/139‑1 (MQ=255)                                                                                                                                    aGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:1432928/139‑1 (MQ=255)                                                                                                                                    aGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:1635099/139‑1 (MQ=255)                                                                                                                                    aGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  2:292292/139‑1 (MQ=255)                                                                                                                                    aGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:758778/139‑1 (MQ=255)                                                                                                                                          |                                                                                                                                      GACGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCT‑‑CCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288420‑2288688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑