| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 960,165 | (T)8→9 | intergenic (+70/‑99) | aroA → / → ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 960,157 | 1 | . | T | 97.7% | 271.1 / ‑1.1 | 85 | intergenic (+62/‑107) | aroA/ycaL | 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative peptidase‑related chaperone |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base T (39/44); total (39/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.32e-01 | |||||||||||
TCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTG > NC_000913/960020‑960287 | tCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑t > 1:1337300/1‑139 (MQ=255) ttGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑ttt > 2:650762/1‑139 (MQ=255) aaaTGCGCGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑tttttttttcg > 2:605485/1‑136 (MQ=255) aaTGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑TTTTTTTTCGGa < 2:1337300/139‑1 (MQ=255) cGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAATTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTtg > 1:696681/1‑139 (MQ=255) cGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTtg > 2:32475/1‑139 (MQ=255) ggCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGAc > 2:1401855/1‑134 (MQ=255) ggCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGAc < 1:1401855/134‑1 (MQ=255) ggCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTtgt < 1:1453987/139‑1 (MQ=255) ccAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGAcc > 1:638112/1‑133 (MQ=255) ccAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGAcc < 2:638112/133‑1 (MQ=255) ccAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGa > 1:1400489/1‑139 (MQ=255) gATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTaa > 1:1452259/1‑139 (MQ=255) attattTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCtt < 1:1500943/120‑1 (MQ=255) attattTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCtt > 2:1500943/1‑120 (MQ=255) attattTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAAt > 2:1277736/1‑139 (MQ=255) attattCCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTTTCGGACCTTGTGAGTCATTTTGATTaa > 2:928100/1‑139 (MQ=255) tttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTa < 2:1443134/133‑1 (MQ=255) tttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTa > 1:1443134/1‑133 (MQ=255) ttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAg < 1:32475/139‑1 (MQ=255) ttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑ttt < 1:1374277/101‑1 (MQ=255) ttCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑ttt > 2:1374277/1‑101 (MQ=255) agcagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTc > 1:535495/1‑139 (MQ=255) agcagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg < 1:731610/139‑1 (MQ=255) gcagcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg < 2:50426/139‑1 (MQ=255) cTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCAtt < 2:137896/116‑1 (MQ=255) cTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCAtt > 1:137896/1‑116 (MQ=255) cTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTg < 2:1400489/139‑1 (MQ=255) tGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGt > 2:143797/1‑139 (MQ=255) ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGt < 2:1452259/139‑1 (MQ=255) gATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTa > 2:1250315/1‑139 (MQ=255) ttAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg < 1:143797/139‑1 (MQ=255) ccAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt < 2:535495/139‑1 (MQ=255) cAGGCAGCCTGAATGAACAACGGGCAATAACTAGCCAAATCTTTCTTTATCAAAACGTCGGTACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTATCGTCGCTTGTCAATGTAAgttgtt < 1:605485/139‑1 (MQ=255) aggaaacaggaatgaaCAACGGGAAAAAAATAGCCAAATCTTTCTTTATCAAACGGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGttgttg < 1:803740/130‑1 (MQ=255) aGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAATTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGttgttg < 2:696681/139‑1 (MQ=255) cAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTg < 2:967647/121‑1 (MQ=255) cAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTg > 1:967647/1‑121 (MQ=255) cAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTg < 2:180156/100‑1 (MQ=255) cAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTg > 1:180156/1‑100 (MQ=255) gCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACa < 1:650762/139‑1 (MQ=255) ccTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGt > 2:1236513/1‑118 (MQ=255) ccTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACat > 2:165717/1‑139 (MQ=255) ccTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTAGCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGt < 1:1236513/118‑1 (MQ=255) cTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTg > 2:1127435/1‑96 (MQ=255) cTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTg < 1:1127435/96‑1 (MQ=255) cTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACata < 2:900455/139‑1 (MQ=255) cTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACata < 2:1614964/139‑1 (MQ=255) cTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACata < 1:1250315/139‑1 (MQ=255) tgaatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTaa > 1:863052/1‑100 (MQ=255) tgaatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTaa < 2:863052/100‑1 (MQ=255) tgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAtt > 2:739219/1‑139 (MQ=255) caacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa < 1:1035809/126‑1 (MQ=255) caacGGGCAATAAATAGCCAAATCTTTCCTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa > 2:1035809/1‑126 (MQ=255) gggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTTGGACCTTGTGAGTCATTTTGATTTATGGTAGCGTCGCTTGTTAATGTAAGTTGTTTATACATAATAtttttttctt > 2:803740/1‑132 (MQ=255) gggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATg > 1:1596583/1‑139 (MQ=255) ggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTg < 2:1031758/82‑1 (MQ=255) ggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGa < 1:739219/139‑1 (MQ=255) ggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCAAATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTg > 1:1031758/1‑82 (MQ=255) gCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt < 1:1277736/139‑1 (MQ=255) cAATAAATTGCCAAATTTTTCTTTAACAAAACGTCGGCAAATTGTCGGCGTTTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt < 1:928100/139‑1 (MQ=255) taaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAAt < 1:648223/139‑1 (MQ=255) aGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt < 2:1623185/107‑1 (MQ=255) aGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt > 1:1623185/1‑107 (MQ=255) gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAg > 1:204865/1‑82 (MQ=255) gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAg < 2:204865/82‑1 (MQ=255) gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgt > 2:1420539/1‑102 (MQ=255) gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgt < 1:1420539/102‑1 (MQ=255) aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg > 1:803821/1‑83 (MQ=255) aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg < 2:803821/83‑1 (MQ=255) aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc > 2:1458471/1‑84 (MQ=255) aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc < 1:1458471/84‑1 (MQ=255) aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGAt > 2:177696/1‑68 (MQ=255) aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGAt < 1:177696/68‑1 (MQ=255) aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa < 1:272349/95‑1 (MQ=255) aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa > 2:272349/1‑95 (MQ=255) tctttcttTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGttgttg > 2:9738/1‑101 (MQ=255) tctttcttTATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGttgttg < 1:9738/101‑1 (MQ=255) tATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCAtt > 1:1373525/1‑54 (MQ=255) tATCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCAtt < 2:1373525/54‑1 (MQ=255) aTCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt < 2:1051111/90‑1 (MQ=255) aTCAAAACGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt > 1:1051111/1‑90 (MQ=255) aaCGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGt > 2:1162887/1‑72 (MQ=255) aaCGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGt < 1:1162887/72‑1 (MQ=255) aCGTCGGCACATTGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAAACAACGGATGATTCACATGAAGAATACt < 2:1596583/139‑1 (MQ=255) tGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCAtt > 1:1324704/1‑35 (MQ=255) tGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCAtt < 2:1324704/35‑1 (MQ=255) tGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg > 2:150394/1‑54 (MQ=255) tGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg < 1:150394/54‑1 (MQ=255) tGTCGGCGT‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTActgctg > 2:1426156/1‑139 (MQ=255) | TCTTGATCCCAAATGCACGGCCAAAACATTTCCGGATTATTTCGAGCAGCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑‑TTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTAATCAACGGATGATTCACATGAAGAATACTAAATTACTGCTG > NC_000913/960020‑960287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |