| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1178460 | 92 (1.220) | 4 (0.050) | 4/202 | 7.2 | 4.3% | coding (1141/1245 nt) | lolE | lipoprotein‑releasing system transmembrane protein |
| ? | NC_000913 | 1178464 = | 87 (1.190) | coding (1145/1245 nt) | lolE | lipoprotein‑releasing system transmembrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGTGATTATCGGCGTAGTGGTTTCACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑TCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1178320‑1178460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGGCGCGCCAGTAATATTGACCCTGCGCGAGTCCTTAGCGGCCAGTAAAGGCAGTACATTAAAACAAGGAGCGGCAATGTATTA > NC_000913/1178464‑1178600 GTGTGATTATCGGCGTAGTGGTTTCACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T < 1:423883/139‑1GTGTGATTATCGGCGTAGTGGTGTCACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTTCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T < 1:1238278/139‑1 TCACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T > 1:1673791/1‑116 TCACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T < 2:1673791/116‑1 ACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T < 1:460789/114‑1 ACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T > 2:460789/1‑114 TGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T < 2:1263667/84‑1 TGAAAAGTTGATCAGTCATCAGTTCCTCTCCGGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T > 1:1263667/1‑84 CTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACGTTCTACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGGCGCGCCAGT > 1:721240/1‑125 CTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACGTTCTACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGGCGCGCCAGT < 2:721240/125‑1 TCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T < 1:1819103/46‑1 TCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑T > 2:1819103/1‑46 CCTGCCATCGGAATTGCACTGGCTGGACG‑TCTACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGG < 1:1023430/88‑1 CCTGCCATCGGAATTGCACTGGCTGGACG‑TCTACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGG > 2:1023430/1‑88 CTACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGGCGCGCCAGTAATATTGACCCTGCGCGAGTCCTTAGCGGCCAGTAAAGGCAGTACATTAAAACAAGGAGCGGCAATGTATTA < 2:914348/139‑1 GTGTGATTATCGGCGTAGTGGTTTCACTGCAACTTACCCCGATTATTGAGTGGATTGAAAAGTTGATCGGTCATCAGTTCCTCTCCAGCGATATCTATTTTATTGATTTCCTGCCATCGGAATTGCACTGGCTGGACG‑TCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1178320‑1178460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctACGTACTGGTCACAGCATTGTTGCTGAGTCTTTTGGCAAGTTGGTATCCGGCGCGGCGCGCCAGTAATATTGACCCTGCGCGAGTCCTTAGCGGCCAGTAAAGGCAGTACATTAAAACAAGGAGCGGCAATGTATTA > NC_000913/1178464‑1178600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |