| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,159,059 | (A)5→4 | coding (570/918 nt) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,159,055 | 0 | A | . | 97.9% | 394.2 / 0.8 | 96 | coding (566/918 nt) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base . (47/47); total (48/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 106 total aligned reads displayed.
GCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAG > NC_000913/4158917‑4159189 | gCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGa < 2:1085924/139‑1 (MQ=255) cGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGaa > 1:117706/1‑139 (MQ=255) tGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGTCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGaaaa > 1:236197/1‑139 (MQ=255) cTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgct > 1:895018/1‑139 (MQ=255) cTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgct > 1:88118/1‑139 (MQ=255) cTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAAGGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgct < 2:529415/139‑1 (MQ=255) gcgcTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGAt > 1:996204/1‑139 (MQ=255) cTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgct > 2:219720/1‑133 (MQ=255) cTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGAGCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgct < 1:219720/133‑1 (MQ=255) ggTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTgg > 2:528004/1‑139 (MQ=255) tGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATGACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑ATAACTGCTGATGCTGGaa < 1:807885/139‑1 (MQ=255) tGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGaa < 2:910494/139‑1 (MQ=255) aaaGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGa < 1:815696/139‑1 (MQ=255) gagCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTc < 2:1245737/139‑1 (MQ=255) gCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCAc > 1:767780/1‑139 (MQ=255) gCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCAc > 1:906183/1‑139 (MQ=255) cGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACt > 2:1182042/1‑139 (MQ=255) ttcattGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTgcg < 2:767780/139‑1 (MQ=255) ttcattGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTgcg < 1:923229/139‑1 (MQ=255) ttGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAGACTGCTGATGCTGCAATATGGTCACTATTTGCGCGAt < 2:861603/139‑1 (MQ=255) gCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCaa < 1:552369/139‑1 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAAt > 2:373267/1‑139 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAAt > 1:1193891/1‑139 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAAt > 2:588327/1‑139 (MQ=255) tgttTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGt < 1:503724/139‑1 (MQ=255) tgatgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCt < 1:1182042/139‑1 (MQ=255) tgatgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCt > 2:14603/1‑139 (MQ=255) tgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGtt > 2:405873/1‑139 (MQ=255) aGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGACGCTGGAAGATGGTCTCTGTTTGCGCGATCAGGCAATGGGTTTCTGtttt < 2:836912/139‑1 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGa > 2:178403/1‑139 (MQ=255) ccAATGTTGCTGGCT‑TCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCCGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGaa > 2:698966/1‑139 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCggg > 2:125666/1‑137 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCggg < 1:125666/137‑1 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGc > 1:116996/1‑139 (MQ=255) gCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCaa > 2:202473/1‑111 (MQ=255) gCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCaa < 1:202473/111‑1 (MQ=255) gCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGa < 2:1193891/139‑1 (MQ=255) tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 1:740811/133‑1 (MQ=255) tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 1:367832/133‑1 (MQ=255) tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 2:367832/1‑133 (MQ=255) tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATg > 2:1203100/1‑139 (MQ=255) tatctatGAAGATCACCAGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTAATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 2:740811/1‑133 (MQ=255) tctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgctg > 1:178988/1‑70 (MQ=255) tctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgctg < 2:178988/70‑1 (MQ=255) tctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTATCTGTTTTGAAGCCGGGGCGGATGaa > 1:247226/1‑139 (MQ=255) gATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt < 1:696895/92‑1 (MQ=255) gATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt > 2:696895/1‑92 (MQ=255) gATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATacaca > 1:1242024/1‑139 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGaaaactg > 2:691616/1‑54 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGaaaactg < 1:691616/57‑4 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAAt > 1:1140305/1‑98 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAAt < 2:1140305/98‑1 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgct < 2:675491/58‑1 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgct > 1:675491/1‑58 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt < 1:1002386/89‑1 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt > 2:1002386/1‑89 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:63417/1‑120 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:63417/120‑1 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATg > 1:558066/1‑126 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATg < 2:558066/126‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGaa < 2:683866/50‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGaa > 1:683866/1‑50 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCa > 1:322970/1‑94 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCa < 2:322970/94‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATggg > 1:266235/1‑99 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATggg < 2:266235/99‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTc > 1:337943/1‑139 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTc > 1:254721/1‑139 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTc > 2:1158875/1‑139 (MQ=255) ccGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATac < 1:37627/130‑1 (MQ=255) ccGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATac > 2:37627/1‑130 (MQ=255) tGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgctg > 1:279448/1‑53 (MQ=255) tGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAActgctg < 2:279448/53‑1 (MQ=255) ggCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGa < 1:14603/139‑1 (MQ=255) cgtaCCGCGAAGGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGAc > 2:749472/4‑139 (MQ=255) aaCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg < 1:405873/139‑1 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTgcg > 2:336273/1‑72 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTgcg < 1:336273/72‑1 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:257339/107‑1 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:257339/1‑107 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAg < 2:530118/116‑1 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAg > 1:530118/1‑116 (MQ=255) cgAATGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTgg < 2:247226/139‑1 (MQ=255) aTGCGTACCGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGaaa < 2:117706/139‑1 (MQ=255) aCCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTg < 1:749472/139‑1 (MQ=255) ccGATGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcg < 1:178403/139‑1 (MQ=255) aTGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGaa > 2:844629/1‑38 (MQ=255) aTGGCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGaa < 1:844629/38‑1 (MQ=38) ggCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGaa > 1:1215510/1‑36 (MQ=255) ggCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGaa < 2:1215510/36‑1 (MQ=37) gCCGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAt > 1:481997/1‑139 (MQ=255) cGATCTGGCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtgg < 2:254721/139‑1 (MQ=255) ggCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGATGCCgggg > 2:799365/1‑79 (MQ=255) ggCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 1:799365/79‑1 (MQ=255) ggCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcgg < 2:88118/139‑1 (MQ=255) gCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggtggc < 1:1203100/139‑1 (MQ=255) gCAGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcggc > 2:38215/1‑139 (MQ=255) caggggAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGa > 1:717104/3‑104 (MQ=255) caggggAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAACATACACACTTCCGCGCGa < 2:717104/102‑1 (MQ=255) aGGGG‑AAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAg < 1:588327/139‑1 (MQ=255) | GCGTGATCCTCGCGCTGGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAG > NC_000913/4158917‑4159189 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |