Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,736,160 +A intergenic (+3/+193) xylR → / ← bax xylose divergent operon transcriptional activator/putative glucosaminidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,736,1591.A100.0% 327.2 / NA 100intergenic (+2/+194)xylR/baxxylose divergent operon transcriptional activator/putative glucosaminidase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (52/48);  total (52/48)

Only 100 of 112 total aligned reads displayed.

CAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCG‑A‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAA  >  NC_000913/3736021‑3736287
                                                                                                                                           |                                                                                                                                 
cAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg                                                                                                                                    <  2:161483/139‑1 (MQ=255)
 aaCCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑a                                                                                                                                  <  2:440384/139‑1 (MQ=255)
   ccaccTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑aat                                                                                                                                >  2:599994/1‑137 (MQ=255)
     accTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑aatga                                                                                                                              <  2:253371/139‑5 (MQ=255)
        ttGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑tgatga                                                                                                                           >  2:774161/1‑139 (MQ=255)
        ttGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑tgatga                                                                                                                           >  1:866095/1‑139 (MQ=255)
                 aaTGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCg                                                                                                                  >  2:1168449/1‑139 (MQ=255)
                    gagaTATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCg                                                                                                               <  1:1168449/139‑1 (MQ=255)
                     agaTATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGt                                                                                                              <  1:599994/139‑1 (MQ=255)
                     agaTATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGt                                                                                                              >  2:181102/1‑139 (MQ=255)
                         atCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTcaca                                                                                                          >  2:370306/1‑139 (MQ=255)
                           cGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑a                                                                                                                                  <  1:501769/113‑1 (MQ=255)
                           cGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCg                                                                                                               >  2:357781/1‑132 (MQ=255)
                           cGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATc                                                                                                        >  1:395256/1‑139 (MQ=255)
                           cGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCAGCGTCACATc                                                                                                        >  1:1072206/1‑139 (MQ=255)
                                aTGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTc                                                                                                                   >  2:417571/1‑123 (MQ=255)
                                aTGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTc                                                                                                                   <  1:417571/123‑1 (MQ=255)
                                 tgtgCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTaa                                                                                                  >  2:479065/1‑139 (MQ=255)
                                        ttATCGATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           <  1:118934/139‑1 (MQ=255)
                                        ttATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATAAGGTAACGCTGCg                                                                                           <  2:866095/139‑1 (MQ=255)
                                               tCGCTGCAATATTTCTACTCTGTTTTTAAAACAGCATATGACACGACGCAACAAGAAACTCGCAATCTAAGTAGCGAGGCCATGTAGTAACG‑AGTGAAGACAAATGACAGTGTCAAATCCGGTAACGCTGCGTGGTTGt                                                                                    >  2:238499/1‑139 (MQ=255)
                                                 gCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           >  2:351216/1‑130 (MQ=255)
                                                 gCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           <  2:511509/130‑1 (MQ=255)
                                                 gCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           >  1:511509/1‑130 (MQ=255)
                                                 gCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           <  1:351216/130‑1 (MQ=255)
                                                  cTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCg                                                                                                               >  2:159789/1‑109 (MQ=255)
                                                  cTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCg                                                                                                               <  1:977874/109‑1 (MQ=255)
                                                  cTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCg                                                                                                               <  1:159789/109‑1 (MQ=255)
                                                  cTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCgg                                                                                 >  1:127195/1‑139 (MQ=255)
                                                    gCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGAt                                                                               >  1:142493/1‑139 (MQ=255)
                                                       atatTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATgcg                                                                            <  2:127195/139‑1 (MQ=255)
                                                             cTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGa                                                                      <  1:515024/139‑1 (MQ=255)
                                                              tACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGaa                                                                     <  2:245734/139‑1 (MQ=255)
                                                               aCTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAAc                                                                    >  1:556434/1‑139 (MQ=255)
                                                                  ctGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGcc                                                                 >  2:149992/1‑139 (MQ=255)
                                                                  ctGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGcc                                                                 >  1:884202/1‑139 (MQ=255)
                                                                   tGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCt                                                                >  2:423018/1‑139 (MQ=255)
                                                                     tttttAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTa                                                              >  1:1258813/1‑139 (MQ=255)
                                                                      ttttAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTAt                                                             <  2:142493/139‑1 (MQ=255)
                                                                              aaGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTa                                                     <  1:512826/139‑1 (MQ=255)
                                                                               aGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTcaca                                                                                                          >  2:259636/1‑85 (MQ=255)
                                                                               aGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTcaca                                                                                                          <  1:259636/85‑1 (MQ=255)
                                                                               aGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           <  2:1031089/100‑1 (MQ=255)
                                                                               aGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           >  1:1031089/1‑100 (MQ=255)
                                                                               aGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTAc                                                    >  1:691688/1‑139 (MQ=255)
                                                                                    atGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGcc                                               <  1:774161/139‑1 (MQ=255)
                                                                                    atGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGcc                                               <  2:556434/139‑1 (MQ=255)
                                                                                         acgacgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTaa                                                                                                  <  1:601899/83‑1 (MQ=255)
                                                                                         acgacgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTaa                                                                                                  >  2:601899/1‑83 (MQ=255)
                                                                                           gacgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGc                                                                  <  1:205663/113‑1 (MQ=255)
                                                                                           gacgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGc                                                                  >  2:205663/1‑113 (MQ=255)
                                                                                           gacgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATg                                        >  1:576025/1‑139 (MQ=255)
                                                                                            acgCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGa                                       >  1:334740/1‑139 (MQ=255)
                                                                                               ccAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATaa                                    <  2:1258813/139‑1 (MQ=255)
                                                                                                cAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑aatga                                                                                                                              >  1:1244430/1‑44 (MQ=255)
                                                                                                cAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑aatga                                                                                                                              <  2:1244430/48‑5 (MQ=255)
                                                                                                cAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGt                                                                                                              >  2:192590/1‑64 (MQ=255)
                                                                                                  aaaGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑aa                                                                                                                                 <  2:133424/43‑2 (MQ=255)
                                                                                                  aaaGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACg‑aa                                                                                                                                 >  1:133424/1‑42 (MQ=255)
                                                                                                  aaaGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGaa                                                                     >  2:908146/1‑103 (MQ=255)
                                                                                                  aaaGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGaa                                                                     <  1:908146/103‑1 (MQ=255)
                                                                                                  aaaGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAAc                                 >  2:242193/1‑139 (MQ=255)
                                                                                                    agagTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                               <  1:242193/139‑1 (MQ=255)
                                                                                                    agagTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGc                               <  2:576025/139‑1 (MQ=255)
                                                                                                       gTATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCAcc                            >  1:920731/1‑139 (MQ=255)
                                                                                                        tATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTc                                                                                                                   >  1:289193/1‑51 (MQ=255)
                                                                                                        tATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACAt                                                                                                         <  1:212719/61‑1 (MQ=255)
                                                                                                        tATCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACAt                                                                                                         >  2:212719/1‑61 (MQ=255)
                                                                                                          tCGCGATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaac                         >  2:1134366/1‑139 (MQ=255)
                                                                                                            gcgATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaacaa                       <  2:334740/139‑1 (MQ=255)
                                                                                                            gcgATGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaacaa                       <  2:920731/139‑1 (MQ=255)
                                                                                                                tGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGAc                                                        <  2:373836/102‑1 (MQ=255)
                                                                                                                tGTAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGAc                                                        >  1:373836/1‑102 (MQ=255)
                                                                                                                  tAAATAGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaacaa                       >  2:787408/1‑133 (MQ=255)
                                                                                                                       aGCGAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCt            <  1:1134366/139‑1 (MQ=255)
                                                                                                                          gAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           >  1:88063/1‑57 (MQ=255)
                                                                                                                          gAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCg                                                                                           <  2:88063/57‑1 (MQ=255)
                                                                                                                          gAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTg                                                                                         <  2:925408/59‑1 (MQ=255)
                                                                                                                          gAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTg                                                                                         >  1:925408/1‑59 (MQ=255)
                                                                                                                          gAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaacaa                       >  2:1190834/1‑125 (MQ=255)
                                                                                                                          gAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaacaa                       <  1:1190834/125‑1 (MQ=255)
                                                                                                                          gAGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGt         >  1:1095374/1‑139 (MQ=255)
                                                                                                                           aGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTaa                                                                                                  <  1:514028/49‑1 (MQ=255)
                                                                                                                           aGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTaa                                                                                                  >  2:514028/1‑49 (MQ=255)
                                                                                                                           aGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaacaa                       >  2:190234/1‑124 (MQ=255)
                                                                                                                           aGGTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACcaacaa                       <  1:190234/124‑1 (MQ=255)
                                                                                                                            ggTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCg                                                                                                               <  1:655691/35‑1 (MQ=255)
                                                                                                                            ggTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCg                                                                                                               >  2:655691/1‑35 (MQ=255)
                                                                                                                            ggTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTg                                                                       <  2:278901/75‑1 (MQ=255)
                                                                                                                            ggTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTg                                                                       >  1:278901/1‑75 (MQ=255)
                                                                                                                            ggTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAg       >  1:497154/1‑139 (MQ=255)
                                                                                                                            ggTCATGTTATAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAAAGCTTCAGGCTCGTAg       >  1:868565/1‑139 (MQ=39)
                                                                                                                             gTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGc                                                                  >  1:1198408/1‑79 (MQ=39)
                                                                                                                             gTCATGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGc                                                                  <  2:1198408/79‑1 (MQ=39)
                                                                                                                                aTGTTGTAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCa   >  2:603545/1‑139 (MQ=255)
                                                                                                                                 tgttgtAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTg                                                                       >  1:1275449/1‑70 (MQ=255)
                                                                                                                                 tgttgtAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa  <  1:827598/139‑1 (MQ=255)
                                                                                                                                 tgttgtAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa  <  1:742852/139‑1 (MQ=255)
                                                                                                                                 tgttgtAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa  >  2:827598/1‑139 (MQ=255)
                                                                                                                                 tgttgtAACGAA‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCaa  <  1:149992/139‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                 
CAACCACCTTGTCGATCAATGAGATATCGCAAATGTGCGGTTATCCATCGCTGCAATATTTCTACTCTGTTTTTAAAAAAGCATATGACACGACGCCAAAAGAGTATCGCGATGTAAATAGCGAGGTCATGTTGTAGCG‑A‑TGATGAGAATTGTCGGCGTCACATCAGGTAACGCTGCGTGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCCGCCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAA  >  NC_000913/3736021‑3736287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑