| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,432,994 | (C)6→7 | coding (567/1125 nt) | smf ← | DNA recombination‑mediator A family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,432,988 | 1 | . | C | 98.5% | 234.2 / ‑3.6 | 67 | coding (573/1125 nt) | smf | DNA recombination‑mediator A family protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (32/34); total (33/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
TGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCG‑C‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCTGTAAGGCTGCTTTATGCGCTAC > NC_000913/3432850‑3433110 | tGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAgcg > 1:224603/1‑139 (MQ=255) cACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCG‑c‑ccccc < 1:257516/139‑1 (MQ=255) cACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCG‑c‑ccccc > 2:52677/1‑139 (MQ=255) aCCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAg > 1:1320385/1‑139 (MQ=255) aCCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCG‑c‑cccccctgtt < 2:1138429/135‑6 (MQ=255) aCCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCG‑c‑cccccctgtt > 1:1138429/1‑130 (MQ=255) aGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGc > 1:542532/1‑139 (MQ=255) aGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGc < 2:542532/139‑1 (MQ=255) caccaccaGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGc < 1:589641/139‑1 (MQ=255) tACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGAcggcg < 2:224603/139‑1 (MQ=255) tACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGAcggcg > 1:726688/1‑139 (MQ=255) tACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGAcggcg < 2:1294120/139‑1 (MQ=255) agtaaaggtgtAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGa > 2:731988/11‑111 (MQ=255) agtaaaggtgtAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGa < 1:731988/101‑1 (MQ=255) aCCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTAtt > 2:900833/1‑139 (MQ=255) cTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGATGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCgggg > 2:835014/1‑123 (MQ=255) cTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGAcgg < 2:1179987/118‑1 (MQ=255) cTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGAcgg > 1:1179987/1‑118 (MQ=255) cTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCgggg > 2:624312/1‑123 (MQ=255) cTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCgggg < 1:624312/123‑1 (MQ=255) cTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCgggg < 1:835014/123‑1 (MQ=255) tGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAgcg‑c > 2:1182781/1‑75 (MQ=255) tGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAgcg‑c < 1:1182781/75‑1 (MQ=255) tGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCgggg > 1:25698/1‑122 (MQ=255) tGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCgggg < 2:25698/122‑1 (MQ=255) tGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTc < 1:52677/139‑1 (MQ=255) tGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTc > 2:1345155/1‑139 (MQ=255) aTAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa < 2:1045800/139‑1 (MQ=255) aTAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa < 2:726688/139‑1 (MQ=255) aTAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa < 1:900833/139‑1 (MQ=255) gCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCa < 2:610810/84‑1 (MQ=255) gCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCa > 1:610810/1‑84 (MQ=255) gCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAAt < 1:1415244/121‑1 (MQ=255) gCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAAt > 2:1415244/1‑121 (MQ=255) ttcttcGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATa > 2:807500/1‑139 (MQ=255) cGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAgcg‑c < 1:1257673/58‑1 (MQ=255) cGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAgcg‑c > 2:1257673/1‑58 (MQ=255) ggAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGc > 1:557475/1‑139 (MQ=255) aTTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAAt > 2:1021282/1‑103 (MQ=255) aTTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAAt < 1:1021282/103‑1 (MQ=255) aTTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTccc > 2:975466/1‑121 (MQ=255) aTTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTccc < 1:975466/121‑1 (MQ=255) aTTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGa > 1:905926/1‑138 (MQ=255) aTTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGa < 2:905926/138‑1 (MQ=255) tAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa < 2:1157687/112‑1 (MQ=255) tAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa > 1:1157687/1‑112 (MQ=255) aGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAAt < 2:625221/97‑1 (MQ=255) aGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAAt > 1:625221/1‑97 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGAc < 1:772881/58‑1 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGAc > 2:772881/1‑58 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGAcggcg < 1:548762/83‑1 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGAcggcg > 2:548762/1‑83 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCt > 2:634458/1‑139 (MQ=255) ggggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCt > 1:545508/1‑139 (MQ=255) gggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCAttt < 2:666340/134‑1 (MQ=255) gggTGGAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCAttt > 1:666340/1‑134 (MQ=255) ggAACATCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCTGTAAg < 1:634458/139‑1 (MQ=255) tCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa > 2:690409/1‑94 (MQ=255) tCGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa < 1:690409/94‑1 (MQ=255) cGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATg < 2:502022/81‑1 (MQ=255) cGAGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATg > 1:502022/1‑81 (MQ=255) gAGGGGAAATTCCGGGACGAGTGCG‑CACCCCCTGTTCAAACCGACTGGCAGGCAGTAGGGCATCAGGGCGGGGATCCATGGTACTAGGTCCATTCCCCAATACAGCAATGCGGACGCCAGTTAGGTGTTAGGCTGCttt > 2:880685/1‑139 (MQ=255) aGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCg < 2:1103740/57‑1 (MQ=255) aGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCg > 1:1103740/1‑57 (MQ=255) aGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTccc < 2:893804/96‑1 (MQ=255) aGGGGAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTccc > 1:893804/1‑96 (MQ=255) gggAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCTGTAAGGCTGCTTTATg < 1:807500/139‑1 (MQ=255) ggAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACg < 1:152122/112‑1 (MQ=255) ggAAATTCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACg > 2:152122/1‑112 (MQ=255) ttCCGAGACGAGAGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCTGTAAGGCTGCTTTATGCGCTac < 2:557475/139‑1 (MQ=255) cgagacgagaGCGCC‑CCCCCTGTTCAAGCAGACTGGc < 2:652981/37‑1 (MQ=255) cgagacgagaGCGCC‑CCCCCTGTTCAAGCAGACTGGc > 1:652981/1‑37 (MQ=255) agacgagaGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGACGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGa < 1:171646/100‑1 (MQ=255) agacgagaGCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGACGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGa > 2:171646/1‑100 (MQ=255) gagCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa > 1:1351370/1‑72 (MQ=255) gagCGCC‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCa < 2:1351370/72‑1 (MQ=255) | TGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTCCACCACCAGTACACCTTTACTTAGACCACTGATAATGCGATTTCTTCGTGGGAAATTGTAAGCAAGGGGTGGAACATCGAGGGGAAATTCCGAGACGAGAGCG‑C‑CCCCCTGTTCAAGCAGACTGGCAGCCAGTCGGGCATGACGGCGGGGATGAATGGTATTAAGTCCATTCCCCAATACAGCAATGCTGACGCCATTTACCTGTAAGGCTGCTTTATGCGCTAC > NC_000913/3432850‑3433110 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |