Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,288,561	(C)7→6	pseudogene (354/2525 nt)	yejO ←	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,288,555	0	C	.	100.0%	344.5 / NA	83	pseudogene (360/2525 nt)	yejO	pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (44/39);  total (44/39)

CGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288422‑2288688                                                                                                                                         |                                                                                                                                      cGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGcccccc                                                                                                                                  <  1:954430/139‑1 (MQ=255) cGGTTTGTTCCGAATACATCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTTCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGcccccg                                                                                                                                  <  2:990964/139‑2 (MQ=255)    tttGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCC‑‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCtt                                                                                                                            >  1:1513256/1‑139 (MQ=255)                              cgTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  2:1525804/1‑139 (MQ=255)                              cgTGGTTGTTTTAATAGCACCGCCTGCTTTCCGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  1:304385/1‑139 (MQ=255)                               gTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCttt                                                                                                   <  1:1207572/139‑1 (MQ=255)                                  gttgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCC‑‑CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  2:1513256/139‑1 (MQ=255)                                    tgttTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg                                                                                              <  1:1525804/139‑1 (MQ=255)                                               cACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTc                                                                                   >  2:755055/1‑139 (MQ=255)                                                 ccGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGc                                                                                 >  1:76268/1‑139 (MQ=255)                                                 ccGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGc                                                                                 >  1:1570879/1‑139 (MQ=255)                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  2:738352/110‑1 (MQ=255)                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  1:738352/1‑110 (MQ=255)                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    <  2:687543/117‑1 (MQ=255)                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt                                                                                                    >  1:687543/1‑117 (MQ=255)                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  2:1285778/1‑139 (MQ=255)                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  2:1256354/1‑139 (MQ=255)                                                    ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc                                                                              >  1:814526/1‑139 (MQ=255)                                                         tttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt                                                                         <  2:814526/139‑1 (MQ=255)                                                         tttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt                                                                         <  1:1285778/139‑1 (MQ=255)                                                                  tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCa                                                                                                                       <  2:768244/84‑1 (MQ=255)                                                                  tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCa                                                                                                                       >  1:768244/1‑84 (MQ=255)                                                                   aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGcccccc                                                                                                                                  <  1:633195/73‑1 (MQ=255)                                                                   aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGcccccc                                                                                                                                  >  2:633195/1‑73 (MQ=255)                                                                   aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  2:1570879/139‑1 (MQ=255)                                                                     cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:304385/139‑1 (MQ=255)                                                                       caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  2:1154742/92‑1 (MQ=255)                                                                       caaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTACAACGATTAAGcgcc                                                                                                          >  1:1154742/1‑92 (MQ=255)                                                                        aaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCacac                                                          <  2:76268/139‑1 (MQ=255)                                                                         aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  1:914557/125‑1 (MQ=255)                                                                         aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       >  2:914557/1‑125 (MQ=255)                                                                         aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAc                                                                     >  2:524948/1‑127 (MQ=255)                                                                         aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAc                                                                     <  1:524948/127‑1 (MQ=255)                                                                               aatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGcccccc                                                                                                                                  >  2:1612134/1‑61 (MQ=255)                                                                               aatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGcccccc                                                                                                                                  <  1:1612134/61‑1 (MQ=255)                                                                               aatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            >  1:738465/1‑98 (MQ=255)                                                                               aatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            <  2:738465/98‑1 (MQ=255)                                                                                          tttAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCt                                        >  1:1351832/1‑139 (MQ=255)                                                                                            tAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               >  2:1305708/1‑114 (MQ=255)                                                                                            tAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg                                                               <  1:1305708/114‑1 (MQ=255)                                                                                                  ccAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGAtt                                                                                                                 >  2:1173977/1‑58 (MQ=255)                                                                                                  ccAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGAtt                                                                                                                 <  1:1173977/58‑1 (MQ=255)                                                                                                  ccAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGcc                                >  2:430930/1‑139 (MQ=255)                                                                                                   cAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcg                                                                                                            <  1:868746/62‑1 (MQ=255)                                                                                                   cAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcg                                                                                                            >  2:868746/1‑62 (MQ=255)                                                                                                   cAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            >  1:855026/1‑78 (MQ=255)                                                                                                   cAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            <  2:855026/78‑1 (MQ=255)                                                                                                    agtagtCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          <  2:231559/63‑1 (MQ=255)                                                                                                    agtagtCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcc                                                                                                          >  1:231559/1‑63 (MQ=255)                                                                                                    agtagtCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAtt                                                                                    >  1:498575/1‑85 (MQ=255)                                                                                                    agtagtCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAtt                                                                                    <  2:498575/85‑1 (MQ=255)                                                                                                    agtagtCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgc                              >  2:1611462/1‑139 (MQ=255)                                                                                                        gtCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            <  2:1098623/73‑1 (MQ=255)                                                                                                        gtCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg                                                                                            >  1:1098623/1‑73 (MQ=255)                                                                                                         tcctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgcg                             >  2:586371/1‑135 (MQ=255)                                                                                                         tcctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCcgcg                             <  1:586371/135‑1 (MQ=255)                                                                                                          cctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       >  1:849659/1‑92 (MQ=255)                                                                                                          cctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa                                                                       <  2:849659/92‑1 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTc                                                                                                                        <  2:535814/42‑1 (MQ=38)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTc                                                                                                                        >  1:535814/1‑42 (MQ=38)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           >  2:731583/1‑55 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc                                                                                                           <  1:731583/55‑1 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAg                                                                                                              >  2:1384159/1‑52 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAg                                                                                                              <  1:1384159/52‑1 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTaa                                                                                                 <  1:816233/65‑1 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTaa                                                                                                 >  2:816233/1‑65 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:631183/101‑1 (MQ=255)                                                                                                           ctccCTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             >  1:631183/1‑101 (MQ=255)                                                                                                             cccTTTTCGATAGCGACGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTg                                  <  1:907953/129‑1 (MQ=255)                                                                                                             cccTTTTCGATAGCGACGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTg                                  >  2:907953/1‑129 (MQ=255)                                                                                                             cccTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa                                                        >  1:1598318/1‑104 (MQ=255)                                                                                                             cccTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa                                                        <  2:1598318/104‑1 (MQ=255)                                                                                                             cccTTTTCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     >  2:433148/1‑139 (MQ=255)                                                                                                                ttttCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTg                  <  1:755055/139‑1 (MQ=255)                                                                                                                  ttCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGaa                <  1:1015756/139‑1 (MQ=255)                                                                                                                  ttCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCCGGTTTGCCGCGCCACCCATTTGaa                >  2:363227/1‑139 (MQ=255)                                                                                                                   tCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             >  1:976747/1‑93 (MQ=255)                                                                                                                   tCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:976747/93‑1 (MQ=255)                                                                                                                   tCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               >  1:22118/1‑139 (MQ=255)                                                                                                                   tCGATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAAc               >  2:680359/1‑139 (MQ=255)                                                                                                                     gATAG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACaa             <  1:720859/139‑1 (MQ=255)                                                                                                                        aG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCG‑CTTTAATCGTGGTATCATTCGCTg                                                                               <  2:533257/69‑1 (MQ=255)                                                                                                                        aG‑‑‑CGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCG‑CTTTAATCGTGGTATCATTCGCTg                                                                               >  1:533257/1‑69 (MQ=255)                                                                                                                             cGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATGAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     <  2:824678/126‑1 (MQ=255)                                                                                                                             cGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATGAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCAt                     >  1:824678/1‑126 (MQ=255)                                                                                                                                cAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             >  1:287052/1‑83 (MQ=255)                                                                                                                                cAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGca                                                             <  2:287052/83‑1 (MQ=255)                                                                                                                                  aaGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAAcc   >  2:791750/1‑139 (MQ=255)                                                                                                                                   aGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCg  <  1:1256354/139‑1 (MQ=255)                                                                                                                                         |                                                                                                                                      CGGTTTGTTCCGAATACCTCCATGGCCCGCGTGGTTGTTTTAATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAG‑‑‑CGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTTTGCCGCGCCACCCATTTGAACAATTTGATAACCG  >  NC_000913/2288422‑2288688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑