Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,769,404	Δ1 bp	pseudogene (60/327 nt)	yibV →	pseudogene, putative cryptic Rhs immunity protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,769,401	0	A	.	100.0%	397.1 / NA	95	pseudogene (57/327 nt)	yibV	pseudogene, putative cryptic Rhs immunity protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (45/50);  total (45/50)

TTAACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGAAAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTGG  >  NC_000913/3769274‑3769535                                                                                                                                |                                                                                                                                       ttaACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCa                                                                                                                            <  1:834107/139‑1 (MQ=255)   aaCAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACt                                                                                                                          <  1:1056506/139‑1 (MQ=255)       aTTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGc                                                                                                                      >  1:1412190/1‑139 (MQ=255)       aTTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGc                                                                                                                      >  1:151287/1‑139 (MQ=255)        ttGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCa                                                                                                                            <  2:71018/132‑1 (MQ=255)        ttGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCa                                                                                                                            >  1:71018/1‑132 (MQ=255)           tATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaaagcgt                                                                                                                                  >  2:626281/1‑120 (MQ=255)           tATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaaagcgt                                                                                                                                  <  1:626281/124‑5 (MQ=255)             tttttttCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTAtttt                                                                                                                >  1:990076/1‑139 (MQ=255)             tttttttCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTAtttt                                                                                                                >  2:48153/1‑139 (MQ=255)             tttttttCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTAtttt                                                                                                                <  1:789117/139‑1 (MQ=255)                   tctcTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGt                                                                                                          <  2:853708/139‑1 (MQ=255)                          ttCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCg                                                                                                   >  2:1349467/1‑139 (MQ=255)                               cGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCCATTTTGCCTGTa                                                                                                         >  2:353216/1‑128 (MQ=255)                               cGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCCATTTTGCCTGTa                                                                                                         <  1:353216/128‑1 (MQ=255)                                   tGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTg                                                                                          >  2:273177/1‑139 (MQ=255)                                       gTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACt                                                                                      <  1:48153/139‑1 (MQ=255)                                           cTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:1412190/139‑1 (MQ=255)                                            tGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGAc                                                                                 <  1:792869/139‑1 (MQ=255)                                              cAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTg                                                                               <  2:151287/139‑1 (MQ=255)                                                aGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACt                                                                                      >  2:1208272/1‑130 (MQ=255)                                                aGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACt                                                                                      <  1:1208272/130‑1 (MQ=255)                                                  aCAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCat                                                                           >  2:55943/1‑139 (MQ=255)                                                              agagTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTg                                                                               >  2:1441664/1‑123 (MQ=255)                                                              agagTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTg                                                                               <  1:1441664/123‑1 (MQ=255)                                                               gagTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGaa                                                              <  1:273177/139‑1 (MQ=255)                                                                agTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAAt                                                             >  1:189643/1‑139 (MQ=255)                                                                        ttGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCgtg                                                                                                                                >  2:1496727/1‑64 (MQ=255)                                                                        ttGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCgtg                                                                                                                                <  1:1496727/64‑1 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaaagc                                                                                                                                    >  2:217032/1‑57 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGaaagc                                                                                                                                    <  1:217032/59‑3 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGc                                                                                                     >  1:533448/1‑89 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGc                                                                                                     <  2:533448/89‑1 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:545026/1‑108 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:277028/108‑1 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:545026/108‑1 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:277028/1‑108 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:795031/1‑108 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:795031/108‑1 (MQ=255)                                                                          ggCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAgg                                                   >  2:45791/1‑139 (MQ=255)                                                                            cAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGaa                                                 >  1:1522818/1‑139 (MQ=255)                                                                             aGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAAt                                                <  1:274232/139‑1 (MQ=255)                                                                               aCAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGc                                                                                                                      >  2:338629/1‑67 (MQ=255)                                                                               aCAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGc                                                                                                                      <  1:338629/67‑1 (MQ=255)                                                                                cAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:129867/102‑1 (MQ=255)                                                                                cAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:129867/1‑102 (MQ=255)                                                                                   aGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACt                                                                                <  1:731207/101‑1 (MQ=255)                                                                                   aGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACt                                                                                >  2:731207/1‑101 (MQ=255)                                                                                   aGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTca                                          <  1:1349467/139‑1 (MQ=255)                                                                                   aGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTca                                          <  1:45791/139‑1 (MQ=255)                                                                                        tattatGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  1:55943/139‑1 (MQ=255)                                                                                        tattatGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  2:1522818/139‑1 (MQ=255)                                                                                            atGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTAt                                 <  2:404159/139‑1 (MQ=255)                                                                                            atGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTAt                                 <  2:564958/139‑1 (MQ=255)                                                                                             tGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCg                                                                                    >  1:965565/1‑87 (MQ=255)                                                                                             tGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCg                                                                                    <  2:965565/87‑1 (MQ=255)                                                                                             tGGGCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATc                                >  2:75238/1‑139 (MQ=255)                                                                                               ggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTAtttt                                                                                                                >  1:866384/1‑57 (MQ=255)                                                                                               ggCACTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTAtttt                                                                                                                <  2:866384/57‑1 (MQ=255)                                                                                                  aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTg                                                                                                           <  1:1477057/59‑1 (MQ=255)                                                                                                  aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTg                                                                                                           >  2:1477057/1‑59 (MQ=255)                                                                                                  aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:1225625/84‑1 (MQ=255)                                                                                                  aCTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:1225625/1‑84 (MQ=255)                                                                                                   cTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCa                                                                                                 >  1:1597178/1‑68 (MQ=255)                                                                                                   cTAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCa                                                                                                 <  2:1597178/68‑1 (MQ=255)                                                                                                    tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  1:372001/82‑1 (MQ=255)                                                                                                    tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  2:372001/1‑82 (MQ=255)                                                                                                    tAATATCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAAtata                         <  2:1409407/139‑1 (MQ=255)                                                                                                      atatCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCg                                                                                    >  1:269906/1‑78 (MQ=255)                                                                                                      atatCAGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCg                                                                                    <  2:269906/78‑1 (MQ=255)                                                                                                       tatCAGCCAGTACTAAATAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGCATGATAACAAGGAATTTCTCACATCCTTATCTAATATAAtc                      <  2:990076/139‑2 (MQ=255)                                                                                                           aGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  2:982861/1‑75 (MQ=255)                                                                                                           aGCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  1:982861/75‑1 (MQ=255)                                                                                                            gCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTg                                                                  <  2:119198/90‑1 (MQ=255)                                                                                                            gCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTg                                                                  >  1:119198/1‑90 (MQ=255)                                                                                                            gCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     >  1:13545/1‑119 (MQ=255)                                                                                                            gCCAGTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  2:13545/119‑1 (MQ=255)                                                                                                                gTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGcc                                                                                                             <  2:153945/43‑1 (MQ=255)                                                                                                                gTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGcc                                                                                                             >  1:153945/1‑43 (MQ=255)                                                                                                                gTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATg                      <  1:427069/130‑1 (MQ=255)                                                                                                                gTACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATg                      >  2:427069/1‑130 (MQ=255)                                                                                                                 tagtgaaGAGGAACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATg                      >  1:935215/6‑129 (MQ=255)                                                                                                                 tACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTAtttt                                                                                                                >  1:891005/1‑39 (MQ=255)                                                                                                                 tACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTAtttt                                                                                                                <  2:891005/39‑1 (MQ=255)                                                                                                                 tACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  <  2:1198301/69‑1 (MQ=255)                                                                                                                 tACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGa                                                                                  >  1:1198301/1‑69 (MQ=255)                                                                                                                 tACTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATg                      <  2:935215/129‑1 (MQ=255)                                                                                                                  aCTAAAGAGGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAAt           <  1:75238/139‑1 (MQ=255)                                                                                                                       agagGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTca                                          >  1:946248/1‑103 (MQ=255)                                                                                                                       agagGGACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTca                                          <  2:946248/103‑1 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTg                                                                  >  1:1003413/1‑75 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTg                                                                  <  2:1003413/75‑1 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACa                                                      <  2:362930/87‑1 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACa                                                      >  1:362930/1‑87 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTgg  >  2:762634/1‑139 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTgg  >  2:1525461/1‑139 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTgg  >  1:76002/1‑139 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCCAATGATAACAAGGAATTTCTCACATcc                                     >  2:988398/1‑104 (MQ=255)                                                                                                                           ggACG‑AAAGCGTGTTCACTAAGCTACTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATcc                                     <  1:988398/104‑1 (MQ=255)                                                                                                                                |                                                                                                                                       TTAACAATTGTATTTTTTTCTCTATTTCTGCGAGTGCAGTTACTGCAAGACAATTTCAGAGAGAGTTAGATTTGGCAGACAAAGCAATATTATGGGCACTAATATCAGCCAGTACTAAAGAGGGACGAAAAGCGTGTTCACTAAGCTATTTTGCCTGTAAGGCCGCAGAGGCTGAACTCGGACTGGCATATATGGCTGCGAATGATAACAAGGAATTTCTCACATCCTTATCTAATATAATGAGGTACAAAATAGATGCTGG  >  NC_000913/3769274‑3769535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑