| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1323147 | 46 (0.720) | 24 (0.380) | 10/208 | 3.8 | 50.5% | intergenic (‑65/‑73) | trpL/yciV | trp operon leader peptide/PHP domain protein |
| ? | NC_000913 | = 3742633 | 1 (0.020) | intergenic (‑101/‑100) | yiaJ/yiaK | transcriptional repressor for the yiaKLMNO‑lyxK‑sgbHUE operon/2,3‑diketo‑L‑gulonate reductase, NADH‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GTTAACTAGTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323117‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG < NC_000913/3742633‑3742499 atatactatgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAA > 2:642504/12‑139atatactatgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAA > 1:692732/12‑139atatactatgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAA > 1:770778/12‑139 atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATTGt > 1:1019542/5‑59 atgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATTGt < 2:1019542/56‑2 tgcCGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGA > 1:888704/4‑139 CGATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGG > 2:615025/1‑139 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAGAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAAT > 2:1052450/1‑120 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGA > 2:924867/1‑139 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGA > 2:1129032/1‑139 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAAT > 1:1493495/1‑120 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAAT < 2:1493495/120‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAAT < 1:1052450/120‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTAT > 2:1052457/1‑64 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTAT < 1:1052457/64‑1 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATA > 1:863686/1‑42 ATGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATA < 2:863686/42‑1 TGATTAATTGTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAA > 1:1440781/1‑139 GTCAACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGA < 1:924867/139‑1 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGTGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG > 2:1130437/1‑139 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCT < 1:215226/86‑1 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCT > 2:215226/1‑86 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCA < 1:418667/75‑1 AACAGGATTGATGAATTTCAAAAGACATAAAAATCAATT‑GTTATAAATTATCTGTCGAGATCGTGAACTACGGCA > 2:418667/1‑75 GTTAACTAGTTCGATGATTAATTGTCAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1323117‑1323147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTGATGAATTTCAAAAGACATAAAAATCAATTGGTTATAAATTATCTGTCGAGATCGTGAACTACGGCACACTTTGCGCTACCATCAGGACGCGACAAAATGGGGAAAGAAGTGATGGGAAAAAAAGAGAACG < NC_000913/3742633‑3742499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |