Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,012,700	C→T	*105* (TAG→TAA)	fliE ←	flagellar basal‑body component

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,012,700	0	C	T	100.0%	250.3 / NA	77	*105* (TAG→TAA)	fliE	flagellar basal‑body component
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (38/39);  total (38/39)

TTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG  >  NC_000913/2012564‑2012832                                                                                                                                          |                                                                                                                                     ttATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGGCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTa                                                                                                                                    >  2:959348/1‑139 (MQ=255) ttATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTa                                                                                                                                    <  1:1253855/139‑1 (MQ=255)   aTCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTaca                                                                                                                                  >  2:1590899/1‑139 (MQ=255)                aTCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  2:1448902/1‑139 (MQ=255)                aTCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  1:354966/1‑139 (MQ=255)                 tCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatc                                                                                                                    >  2:714518/1‑139 (MQ=255)                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatca                                                                                                                   >  2:368149/1‑139 (MQ=255)                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatca                                                                                                                   >  1:709980/1‑139 (MQ=255)                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcatca                                                                                                                   <  2:1235566/139‑1 (MQ=255)                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtca                                                                                                                      >  1:1395357/1‑136 (MQ=255)                  cGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtca                                                                                                                      <  2:1395357/136‑1 (MQ=255)                    tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGc                                                                                                                             <  2:1133354/127‑1 (MQ=255)                    tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGc                                                                                                                             >  1:1133354/1‑127 (MQ=255)                    tGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACt                                                                                                                 >  1:835496/1‑139 (MQ=255)                          gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     <  2:465336/129‑1 (MQ=255)                          gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  1:465336/1‑129 (MQ=255)                          gCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGa                                                                                                           >  1:249388/1‑139 (MQ=255)                           cAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGAt                                                                                                          >  1:779514/1‑139 (MQ=255)                                  cGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATAcgccgc                                                                                                   <  1:368149/139‑1 (MQ=255)                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 <  2:841603/139‑1 (MQ=255)                                    ttCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 >  1:94084/1‑139 (MQ=255)                                     tCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                <  2:709980/139‑1 (MQ=255)                                     tCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                <  1:714518/139‑1 (MQ=255)                                       aGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTACAAAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                               <  2:826672/139‑1 (MQ=255)                                         gATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGc                                                                                            <  1:1448902/139‑1 (MQ=255)                                          aTCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCt                                                                                           <  1:1538788/139‑1 (MQ=255)                                          aTCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCt                                                                                           <  2:94084/139‑1 (MQ=255)                                            cAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCtta                                                                                         <  2:145695/139‑1 (MQ=255)                                                 aTCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTTCTGATACGCCGCCACCAGCTTATTACg                                                                                    <  1:959348/139‑1 (MQ=255)                                                 aTCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACg                                                                                    <  2:249388/139‑1 (MQ=255)                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCt                                                                                                                        >  1:1101826/1‑97 (MQ=255)                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCt                                                                                                                        <  2:1101826/97‑1 (MQ=255)                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                <  1:1114780/121‑1 (MQ=255)                                                       tttAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccac                                                                                                >  2:1114780/1‑121 (MQ=255)                                                          aaaCCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAAt                                                                           >  1:205615/1‑139 (MQ=255)                                                            aCCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     <  1:508599/95‑1 (MQ=255)                                                            aCCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCtcat                                                                                                                     >  2:508599/1‑95 (MQ=255)                                                                gAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCAt                                                                     <  1:1590899/139‑1 (MQ=255)                                                                                 ccccATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCa                                                                >  1:315660/1‑127 (MQ=255)                                                                                 ccccATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCa                                                                <  2:315660/127‑1 (MQ=255)                                                                                          tGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTg                                                                              >  1:63021/1‑104 (MQ=255)                                                                                          tGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTg                                                                              <  2:63021/104‑1 (MQ=255)                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                               <  2:532873/86‑1 (MQ=255)                                                                                           gCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGccacc                                                                                               >  1:532873/1‑86 (MQ=255)                                                                                            ccccACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                         <  1:255738/139‑1 (MQ=255)                                                                                              ccACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                       >  2:162579/1‑139 (MQ=255)                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGCTACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTg                                                                  >  2:264854/1‑110 (MQ=255)                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATc                                                                          <  2:104629/102‑1 (MQ=255)                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATc                                                                          >  1:104629/1‑102 (MQ=255)                                                                                                aCGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTg                                                                  <  1:264854/110‑1 (MQ=255)                                                                                                 cgcgGTGAGATGGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                    <  2:1044915/139‑1 (MQ=255)                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCa                                                                                                                            >  2:899583/1‑51 (MQ=255)                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCa                                                                                                                            <  1:899583/51‑1 (MQ=255)                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                         <  1:419167/134‑1 (MQ=255)                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCata                                         >  2:419167/1‑134 (MQ=255)                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCa                                           <  1:277130/132‑1 (MQ=255)                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCa                                           >  2:277130/1‑132 (MQ=255)                                                                                                 cgcgGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGt                                    >  1:910358/1‑139 (MQ=255)                                                                                                      tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGc                                                                                                                         >  2:716168/1‑49 (MQ=255)                                                                                                      tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGc                                                                                                                         <  1:716168/49‑1 (MQ=255)                                                                                                      tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                       >  1:387276/1‑131 (MQ=255)                                                                                                      tGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATc                                       <  2:387276/131‑1 (MQ=255)                                                                                                        agaTCGGATGTAATTAACAACAGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATcaca                             <  2:354966/139‑1 (MQ=255)                                                                                                                        acaacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 <  1:1550549/55‑1 (MQ=255)                                                                                                                        acaacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 >  2:1550549/1‑55 (MQ=255)                                                                                                                         caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 >  2:742857/1‑54 (MQ=255)                                                                                                                         caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGcca                                                                                                 <  1:742857/54‑1 (MQ=255)                                                                                                                         caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgcc            >  1:797656/1‑139 (MQ=255)                                                                                                                         caacaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacgcc            >  1:632190/1‑139 (MQ=255)                                                                                                                           acaGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCgg          >  2:905366/1‑139 (MQ=255)                                                                                                                             aGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacg              >  1:157407/1‑133 (MQ=255)                                                                                                                             aGGTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAacgccacg              <  2:157407/133‑1 (MQ=255)                                                                                                                               gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCttatta                                                                                      >  2:760628/1‑59 (MQ=255)                                                                                                                               gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCttatta                                                                                      <  1:760628/59‑1 (MQ=255)                                                                                                                               gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCttt                                                <  2:678989/97‑1 (MQ=255)                                                                                                                               gTTAC‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCttt                                                >  1:678989/1‑97 (MQ=255)                                                                                                                                   c‑AAAACTTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCg  <  2:632190/139‑1 (MQ=255)                                                                                                                                          |                                                                                                                                     TTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAACAGGTTAC‑AAAACCTACACCTGCATGCTCATCACTTCCTGATACGCCGCCACCAGCTTATTACGCACCTGAATCCCCATTTGCATAGAAACTGAGGCTTTTTGCATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCG  >  NC_000913/2012564‑2012832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑