| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,159,054 | Δ1 bp | coding (565/918 nt) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,159,051 | 0 | G | . | 98.0% | 211.0 / ‑2.2 | 51 | coding (562/918 nt) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (27/23); total (28/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 | |||||||||||
GGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCG > NC_000913/4158933‑4159185 | ggTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg < 2:164277/139‑1 (MQ=255)ggTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg > 2:499645/1‑139 (MQ=255) aaaGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGa < 1:157705/139‑1 (MQ=255) agagagCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATg > 2:334513/1‑139 (MQ=255) agCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCa < 1:620629/139‑1 (MQ=255) gCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGa > 1:822536/1‑132 (MQ=255) gCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGa < 2:822536/132‑1 (MQ=255) gCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCAc > 1:1075492/1‑139 (MQ=255) gCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCAc > 1:154747/1‑139 (MQ=255) ttGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCAAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt < 2:679908/139‑1 (MQ=255) gCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCaa < 2:973225/139‑1 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg < 1:978264/108‑1 (MQ=255) ccGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTgg > 2:978264/1‑108 (MQ=255) ttgttTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATggg > 2:602884/1‑139 (MQ=255) gCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 1:602884/139‑1 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAgggaaa < 1:1030855/69‑4 (MQ=255) cTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGaaa > 2:1030855/1‑69 (MQ=255) tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATg > 2:868401/1‑139 (MQ=255) tctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTg > 2:530557/1‑94 (MQ=255) tctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTg < 1:530557/94‑1 (MQ=255) aGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGcgcg < 2:514890/91‑1 (MQ=255) aGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGcgcg > 1:514890/1‑91 (MQ=255) gATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATacaca > 2:143816/1‑139 (MQ=255) aTCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgc < 1:387738/59‑1 (MQ=255) aTCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAActgc > 2:387738/1‑59 (MQ=255) tCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACt > 1:560976/1‑139 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAggg > 1:819991/1‑48 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAggg < 2:819991/48‑1 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACt > 1:489327/1‑138 (MQ=255) cACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACt < 2:489327/138‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTgcg < 1:841198/84‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTgcg > 2:841198/1‑84 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt < 1:32851/88‑1 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGAt > 2:32851/1‑88 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATTGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTc > 1:740545/1‑139 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTc > 1:398605/1‑139 (MQ=255) aCCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGCCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTc > 1:852858/1‑139 (MQ=255) ccGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCcg > 1:837460/1‑139 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg < 2:398680/107‑1 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgggg > 1:398680/1‑107 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGc > 2:294686/1‑139 (MQ=255) aCCGCGAATGCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCAGGGCGGATGAAGATACACACTTCCGCGCGACCAGc > 1:648984/1‑139 (MQ=255) gCGTACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAAct < 2:978966/139‑1 (MQ=255) tACCGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTg < 2:398605/139‑1 (MQ=255) ccGATGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcg < 2:837460/139‑1 (MQ=255) aTGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCg > 2:87826/1‑87 (MQ=255) aTGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCg < 1:87826/87‑1 (MQ=255) tGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCggg > 1:1005138/1‑88 (MQ=255) tGGCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCggg < 2:1005138/88‑1 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTgg > 2:541403/1‑124 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTgg < 1:541403/124‑1 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACa > 2:598239/1‑139 (MQ=255) ggCCGATCTGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACa < 1:334513/139‑1 (MQ=255) tGGCA‑GGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTggcg < 2:154747/139‑1 (MQ=255) | GGTGAAAGAGAGCGAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCG > NC_000913/4158933‑4159185 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |