Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,782,393	(C)5→4	coding (334/4581 nt)	ypjA ←	adhesin‑like autotransporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,782,389	0	C	.	100.0%	336.8 / NA	78	coding (338/4581 nt)	ypjA	adhesin‑like autotransporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (39/39);  total (39/39)

ACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGA  >  NC_000913/2782256‑2782520                                                                                                                                      |                                                                                                                                    accaTCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                                <  1:492410/139‑3 (MQ=255)     tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                           >  1:811439/1‑139 (MQ=255)     tCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATg                                                                                                                           >  2:948178/1‑139 (MQ=255)       aaTGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAcc                                                                                                                                    >  1:601402/1‑129 (MQ=255)       aaTGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAcc                                                                                                                                    <  2:601402/129‑1 (MQ=255)           aGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     <  2:855271/139‑1 (MQ=255)           aGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     <  1:1289558/139‑1 (MQ=255)            gTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGAc                                                                                                                    >  2:792749/1‑139 (MQ=255)                   aTTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGc                                                                                                             <  2:469528/139‑1 (MQ=255)                    ttCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgtca                                                                                                                              <  1:382445/122‑5 (MQ=255)                    ttCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgtca                                                                                                                              >  2:382445/1‑118 (MQ=255)                     tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     >  2:1171078/1‑129 (MQ=255)                     tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     <  1:1171078/129‑1 (MQ=255)                     tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                           <  1:1010629/139‑1 (MQ=255)                     tCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                           >  2:832462/1‑139 (MQ=255)                            ccctccctCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTAATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTaa                                                                                                    <  1:1253165/139‑1 (MQ=255)                                 cctcTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGtt                                                                                               <  2:798311/139‑1 (MQ=255)                                   tctACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTaa                                                                                                    >  2:923629/1‑132 (MQ=255)                                   tctACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTaa                                                                                                    <  1:923629/132‑1 (MQ=255)                                    ctACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGta                                                                                            >  2:1209681/1‑139 (MQ=255)                                     tACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtat                                                                                           >  2:859306/1‑139 (MQ=255)                                       cgcgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                         >  1:734167/1‑139 (MQ=255)                                       cgcgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                         >  1:635649/1‑139 (MQ=255)                                       cgcgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGtatta                                                                                         >  1:234773/1‑139 (MQ=255)                                         cgTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTattatt                                                                                       >  1:1102288/1‑139 (MQ=255)                                           tGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                       >  1:616525/1‑105 (MQ=255)                                           tGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAAtt                                                                                                                       <  2:616525/105‑1 (MQ=255)                                           tGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                              >  1:356233/1‑130 (MQ=255)                                           tGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                              <  2:356233/130‑1 (MQ=255)                                            gAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGc                                                                                    <  1:859306/139‑1 (MQ=255)                                             aaGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGAc                                                                                                                    <  2:1253884/106‑1 (MQ=255)                                             aaGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGAc                                                                                                                    >  1:1253884/1‑106 (MQ=255)                                             aaGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGcc                                                                                   >  2:266821/1‑139 (MQ=255)                                               gCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTg                                                                                 <  2:635649/139‑1 (MQ=255)                                                 aCCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGcc                                                                               >  1:1012892/1‑139 (MQ=255)                                                     cccTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCcac                                                                           >  1:650666/1‑139 (MQ=255)                                                        ttAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaa                                                                        <  1:1209681/139‑1 (MQ=255)                                                               tCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                                <  2:370221/77‑3 (MQ=255)                                                               tCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATAccccgt                                                                                                                                >  1:370221/1‑75 (MQ=255)                                                               tCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTa                                                                 <  1:1101872/139‑1 (MQ=255)                                                                 gTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATg                                                               <  2:650666/139‑1 (MQ=255)                                                                 gTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATg                                                               <  1:948178/139‑1 (MQ=255)                                                                  ttCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCTACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCAAAAAATTGTTATGa                                                              >  2:888427/1‑139 (MQ=255)                                                                   tCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGAc                                                             <  2:1012892/139‑1 (MQ=255)                                                                        tGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCt                                                        <  1:168848/139‑1 (MQ=255)                                                                         gCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCta                                                       <  1:888427/139‑1 (MQ=255)                                                                                    cTTTATAAACGTTCTGATTGCCACTCTCGATTGTCGTACCTGTGCAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCcac                                                                           <  2:875760/108‑1 (MQ=255)                                                                                    cTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCcac                                                                           >  1:875760/1‑108 (MQ=255)                                                                                    cTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATc                                                   <  2:32875/132‑1 (MQ=255)                                                                                    cTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATc                                                   >  1:32875/1‑132 (MQ=255)                                                                                    cTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGatat                                            >  2:305249/1‑139 (MQ=255)                                                                                     tttATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     >  2:1028450/1‑65 (MQ=255)                                                                                     tttATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     <  1:1028450/65‑1 (MQ=255)                                                                                       tataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaa                                                                        <  1:603502/108‑1 (MQ=255)                                                                                       tataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaa                                                                        >  2:603502/1‑108 (MQ=255)                                                                                        ataAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATccac                                        <  1:792749/139‑1 (MQ=255)                                                                                             cGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                           <  1:435089/67‑1 (MQ=255)                                                                                             cGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCa                                                                                                           >  2:435089/1‑67 (MQ=255)                                                                                              gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaaa                                                                       <  2:1222992/102‑1 (MQ=255)                                                                                              gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACaaaa                                                                       >  1:1222992/1‑102 (MQ=255)                                                                                              gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTg                                                >  2:964096/1‑125 (MQ=255)                                                                                              gTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTg                                                <  1:964096/125‑1 (MQ=255)                                                                                               tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     >  2:1091567/1‑55 (MQ=255)                                                                                               tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     <  1:1091567/55‑1 (MQ=255)                                                                                               tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTc                                 >  2:243163/1‑139 (MQ=255)                                                                                               tCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTc                                 >  2:188003/1‑139 (MQ=255)                                                                                                 cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     <  2:691378/53‑1 (MQ=255)                                                                                                 cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGa                                                                                                                     >  1:691378/1‑53 (MQ=255)                                                                                                 cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGa                                    >  1:1150127/1‑134 (MQ=255)                                                                                                 cTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGa                                    <  2:1150127/134‑1 (MQ=255)                                                                                                      tGCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGa                          <  1:13282/139‑1 (MQ=255)                                                                                                       gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                         <  1:188003/139‑1 (MQ=255)                                                                                                       gCCACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGAc                         <  1:305249/139‑1 (MQ=255)                                                                                                         cACTCTCGATTGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACtt                       <  2:811439/139‑1 (MQ=255)                                                                                                                   tGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGc                                                                                                             >  1:243729/1‑43 (MQ=255)                                                                                                                   tGTCGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGc                                                                                                             <  2:243729/43‑1 (MQ=255)                                                                                                                      cGTACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATAccc          >  1:1149891/1‑139 (MQ=255)                                                                                                                        tACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGc                                                                                                             <  1:732154/38‑1 (MQ=255)                                                                                                                        tACCTGTGGAAATA‑CCCCGTCATGAATTGACTGTCTGc                                                                                                             >  2:732154/1‑38 (MQ=255)                                                                                                                             gtgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATg   >  1:1274304/1‑139 (MQ=255)                                                                                                                              tgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                              <  1:514040/47‑1 (MQ=255)                                                                                                                              tgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTg                                                                                              >  2:514040/1‑47 (MQ=255)                                                                                                                              tgGAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGa  >  2:1305836/1‑139 (MQ=255)                                                                                                                               ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGa                                    >  2:158790/1‑104 (MQ=255)                                                                                                                               ggAAATA‑CCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGa                                    <  1:158790/104‑1 (MQ=255)                                                                                                                                      |                                                                                                                                    ACCATCAATGAGTATTCCATTCGCACTCCCTCCCTCTACGCGTGAAGCACCGCCCTTAATTGTCGTTCCATTGCTGATACCCCCTTTATAAACGTCCTGATTGCCACTCTCGATTGTCGTACCTGTGGAAATACCCCCGTCATGAATTGACTGTCTGCCACCGTTAATGGTTGTATTATTAGCCTGCCCCACAAAATTGTTATGACTTCCTATATCTTGATATCCACCAGATTCAATAAGACTTCCATTAGATACCCCGCCATGA  >  NC_000913/2782256‑2782520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑