| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,271,455 | G→A | T132I (ACC→ATC) | chaA ← | calcium/sodium:proton antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,271,455 | 0 | G | A | 100.0% | 157.0 / NA | 49 | T132I (ACC→ATC) | chaA | calcium/sodium:proton antiporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (25/24); total (25/24) | |||||||||||
TTAATGCTACCAGTAACGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGGTGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTCGCCGGTTGCCATTA > NC_000913/1271321‑1271575 | ttAATGCTACCAGTAACGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGc < 2:628493/139‑1 (MQ=255) ccAGTAACGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGc < 2:992034/130‑1 (MQ=255) ccAGTAACGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCCTGATACCAAACAGAATCATATATTGCATGGc > 1:992034/1‑130 (MQ=255) aCGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGAc < 2:199736/135‑1 (MQ=255) aCGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGAc > 1:199736/1‑135 (MQ=255) cGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑Gccc < 1:1080586/139‑1 (MQ=255) ttGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGc < 2:63136/112‑1 (MQ=255) ttGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGc > 1:63136/1‑112 (MQ=255) gAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATg > 2:569731/1‑136 (MQ=255) gAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATg < 1:569731/136‑1 (MQ=255) tGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCa > 2:986796/1‑127 (MQ=255) tGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCa < 1:986796/127‑1 (MQ=255) tGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATc > 2:156039/1‑139 (MQ=255) aaTACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGc < 1:1292675/80‑1 (MQ=255) aaTACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGc > 2:1292675/1‑80 (MQ=255) aaTACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATaa < 1:156039/139‑1 (MQ=255) aCCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACaat > 1:341057/1‑99 (MQ=255) aCCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACaat < 2:341057/99‑1 (MQ=255) cAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGcc > 1:1030378/1‑108 (MQ=255) cAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGcc < 2:1030378/108‑1 (MQ=255) tACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAAc > 1:939751/1‑108 (MQ=255) tACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAAc < 2:939751/108‑1 (MQ=255) gCCAGGGGGAACAGCGCAATTAAATACTGCTTGAGACCAAACAGATTCATATATTGGATGGc < 1:870983/62‑1 (MQ=255) gCCAGGGGGAACAGCGCAATTAAATACTGCTTGAGACCAAACAGATTCAGATATTGGATGGc > 2:870983/1‑62 (MQ=255) ggggAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑Gccc < 1:1194645/73‑1 (MQ=255) ggggAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑Gccc > 2:1194645/1‑73 (MQ=255) tACTGCTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGt > 1:1085522/1‑139 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCcaa < 1:769664/51‑1 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAg > 2:712755/1‑64 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAg < 1:712755/64‑1 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAAc > 1:1261421/1‑69 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAAc < 2:1261421/69‑1 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTc < 1:727784/135‑1 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTc > 2:727784/1‑135 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTCGCCg > 2:872932/1‑139 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTCGCCg > 2:1246304/1‑139 (MQ=255) cTTGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGT‑ACAAACATAATGATTGAATAAAGCGTAACACAACTTAGCGTTGGCGCGGCGTcggcgg > 1:220077/1‑139 (MQ=255) cTTGATACCAAACAGATACATATATTGGATGGCAAACTTACGACC‑GCCcaa > 2:769664/1‑51 (MQ=255) taaTACCAAACAGATTCATTTATTGGAT‑GCCAACTTTCGGCCGGCCCACCATAAATGAAAA‑CCAACCCGCCCCCCCGTTACAATCATAATGATTGAATAGAGCGTATCACACATTAGCGTTGGCGCGGCGTCGCCGGtt < 2:220077/137‑1 (MQ=255) tGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGt > 1:1127083/1‑79 (MQ=255) tGATACCAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGt < 2:1127083/79‑1 (MQ=255) cAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTCGCCGGtt > 1:665266/1‑134 (MQ=255) cAAACAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTCGCCGGtt < 2:665266/134‑1 (MQ=255) aaCAGATTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTCGCCGGTTGCCATTa > 2:329707/1‑139 (MQ=255) aTTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGcc < 1:1162869/59‑1 (MQ=255) aTTCATATATTGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGcc > 2:1162869/1‑59 (MQ=255) atTGGATGGCAAACTTACGACC‑GCCCAACAATAATg > 2:653862/1‑36 (MQ=255) atTGGATGGCAAACTTACGACC‑GCCCAACAATAATg < 1:653862/36‑1 (MQ=255) tGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGcc < 2:373153/49‑1 (MQ=255) tGGATGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATg < 1:358165/69‑1 (MQ=255) | TTAATGCTACCAGTAACGCCTGACCGGTTGAAAAATTCGCCGCAGGCAGAGCCATTGGAAATACCAGTACGATTATCGCCAGGGGGAACAGCGCAATTAAATACTGCTTGATACCAAACAGATTCATATATTGGGTGGCAAACTTACGACC‑GCCCAACAATAATGAAAAGCCAACCAGCCCACCGGTAACAATCATAATGATTGAATAGAGCGTATCACGCATTAGCGTTGGCGCGGCGTCGCCGGTTGCCATTA > NC_000913/1271321‑1271575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |