Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,399,985 (C)7→8 coding (252/516 nt) ogt ← O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,399,9781.C97.4% 129.7 / ‑3.2 38coding (259/516 nt)ogtO‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase
Reads supporting (aligned to +/- strand):  ref base . (0/1);  new base C (18/19);  total (18/20)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.98e-01

GGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑CCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATGCGCTCATAGCCTTCTTTGCGATAATGGATGTCC  >  NC_000913/1399841‑1400111
                                                                                                                                          |                                                                                                                                      
gggATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑c                                                                                                                                       <  2:14298/139‑1 (MQ=255)
   aTTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccc                                                                                                                                    <  2:514881/139‑1 (MQ=255)
     tCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc                                                                                                                                  >  1:314258/1‑139 (MQ=255)
      cGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGTCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑c                                                                                                                                <  2:441661/139‑1 (MQ=255)
      cGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑c                                                                                                                                <  1:1167841/139‑1 (MQ=255)
        aTCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑ccg                                                                                                                              <  1:1294919/139‑3 (MQ=255)
        aTCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑ccg                                                                                                                              <  2:314258/139‑3 (MQ=255)
           cGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑ccgtag                                                                                                                           <  1:742513/139‑6 (MQ=255)
            gTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGc                                                                                                                           >  1:1618950/1‑139 (MQ=255)
               tGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑ccgtag                                                                                                                           >  2:76574/1‑130 (MQ=255)
               tGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑ccgtag                                                                                                                           <  1:76574/135‑6 (MQ=255)
                   gCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGa                                                                                                                    <  1:1135659/139‑1 (MQ=255)
                     aCCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAg                                                                                                                  <  1:1403992/139‑1 (MQ=255)
                     aCCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑CCCCCCGCGTAGCAGTGGGAAg                                                                                                                  <  1:1226323/139‑1 (MQ=255)
                           ggCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGc                                                                                                                           <  1:799068/124‑1 (MQ=255)
                           ggCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGc                                                                                                                           >  2:799068/1‑124 (MQ=255)
                                            gACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTAc                                                                                           >  1:422658/1‑139 (MQ=255)
                                                 cccAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCa                                                                                      >  2:867498/1‑139 (MQ=255)
                                                 cccAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCa                                                                                      >  2:1831195/1‑139 (MQ=255)
                                                    aaTTGCTCAACCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCaaaa                                                                                   <  2:544185/139‑1 (MQ=255)
                                                      ttGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAata                                                                                 <  2:1618950/139‑1 (MQ=255)
                                                           cAGCCAGTTGGCCGCAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCCGGGGGAAGCGTATCCATAAAGCTAAGATTACCGGCCAAATATTCAc                                                                            >  1:381632/1‑139 (MQ=255)
                                                                        gTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGGAGCGTATCAATAATGATAAGATTACCGGCAAAATATTCACGAAGCTTGTCGcc                                                               >  2:852932/1‑138 (MQ=255)
                                                                         tAATGCATTATCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCT‑AGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTa                                                             <  1:1581439/139‑1 (MQ=255)
                                                                          aaTGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCt                                                                                                   >  1:461473/1‑101 (MQ=255)
                                                                          aaTGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCt                                                                                                   <  2:461473/101‑1 (MQ=255)
                                                                          aaTGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTa                                                             <  2:422658/139‑1 (MQ=255)
                                                                           aTGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTaa                                                            <  1:1671165/139‑1 (MQ=255)
                                                                           aTGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTaa                                                            <  2:571414/139‑1 (MQ=255)
                                                                                       cccGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCaat                                                                                                         <  2:1818754/82‑1 (MQ=255)
                                                                                       cccGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCaat                                                                                                         >  1:1818754/1‑82 (MQ=255)
                                                                                             ggggATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACTGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGc                                          >  1:475133/1‑139 (MQ=255)
                                                                                                gATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAGGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGa                                       <  1:867498/139‑1 (MQ=255)
                                                                                                    gTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑ccgtag                                                                                                                           >  2:193504/1‑45 (MQ=255)
                                                                                                    gTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑cccccc‑ccgtag                                                                                                                           <  1:193504/50‑6 (MQ=255)
                                                                                                      gCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCaa                                                                                                          <  1:1623042/66‑1 (MQ=255)
                                                                                                      gCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCaa                                                                                                          >  2:1623042/1‑66 (MQ=255)
                                                                                                      gCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATgcg                                 >  1:1729727/1‑139 (MQ=255)
                                                                                                       cGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATgcgc                                <  2:31608/139‑1 (MQ=255)
                                                                                                               tttCCAGACTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATGCGCTCATAGcc                        >  1:1074045/1‑139 (MQ=255)
                                                                                                                      aCTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATGCGCTCAt                            <  2:887464/128‑1 (MQ=255)
                                                                                                                      aCTTCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATGCGCTCAt                            >  1:887464/1‑128 (MQ=255)
                                                                                                                        ttCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCtt                                                                     >  2:607511/1‑85 (MQ=255)
                                                                                                                        ttCGCGCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCtt                                                                     <  1:607511/85‑1 (MQ=255)
                                                                                                                          cgcgCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTAt                                                                                                             >  2:675279/1‑43 (MQ=255)
                                                                                                                          cgcgCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTAt                                                                                                             <  1:675279/43‑1 (MQ=255)
                                                                                                                          cgcgCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGcc                                                      <  2:1832226/98‑1 (MQ=255)
                                                                                                                          cgcgCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGcc                                                      >  1:1832226/1‑98 (MQ=255)
                                                                                                                          cgcgCTGAAATGGCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATGCGCTCATAGCCTTCTTTGCGAt             >  1:597620/1‑139 (MQ=255)
                                                                                                                                     ggCGTCCCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATGCGCTCATAGCCTTCTTTGCGATAATGGATGTcc  <  1:1831195/139‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                      
GGGATTCGATCCGTTTGCCGCACCAACGGCACGCGCCGCGCCAGGACGGCCCAATTGCTCAGCCAGTTGGCCGTAATGCATTACCTGCCCGCAGGGGATAGTGCGTAGTGTTTTCCAGACTTCGCGCTGAAATGGCGT‑CCCCCC‑CGTAGCAGTGGGAAGCGTATCAATAATGCTAAGATTACCGGCAAAATATTCACGAAGCTTGTCGCTTAAACCGCCTGGATTGGTGGCAGAAATGCGCTCATAGCCTTCTTTGCGATAATGGATGTCC  >  NC_000913/1399841‑1400111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑