Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	566,245	0	G	A	57.7%	19.9 / 93.2	79	pseudogene (132/279 nt)	exoD	pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base G (14/19);  new base A (21/24);  total (35/44)
Fisher's exact test for biased strand distribution p-value = 8.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01
Rejected as consensus: Frequency below/above cutoff threshold.

TGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAC  >  NC_000913/566108‑566378                                                                                                                                          |                                                                                                                                       tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgc                                                                                                                                       >  1:322762/1‑139 (MQ=255)  gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgcg                                                                                                                                      <  2:760679/139‑1 (MQ=255)       ccAAATACAAAACCAATTTAAGCCCGTGCCCCGCCCATTTTTTCGCTGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGt                                                                                                                                 >  1:336448/1‑139 (MQ=255)                aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTgg                                                                                                                       >  2:63786/1‑139 (MQ=255)                aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTgg                                                                                                                       >  2:923002/1‑139 (MQ=255)                aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTgg                                                                                                                       >  1:52273/1‑139 (MQ=255)                  aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCa                                                                                                                     <  1:1059703/139‑1 (MQ=255)                       tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTa                                                                                                                >  2:428705/1‑139 (MQ=255)                                 tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCt                                                                                                      >  2:572078/1‑139 (MQ=255)                                 tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCt                                                                                                      >  1:1251574/1‑139 (MQ=255)                                 tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCt                                                                                                      >  1:571079/1‑139 (MQ=255)                                           aTTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCa                                                                                            <  1:1137215/139‑1 (MQ=255)                                             tttttCGATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATacg                                                                                                                                      >  2:1206827/1‑96 (MQ=255)                                              ttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                                                                         <  2:322762/139‑1 (MQ=255)                                                   gATGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATg                                                                                    <  2:336448/139‑1 (MQ=255)                                                    aTGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGc                                                                                   <  1:663073/139‑1 (MQ=255)                                                     tGAACTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCt                                                                                  <  1:614298/139‑1 (MQ=255)                                                       aaCTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                                                                                                  >  2:503499/1‑90 (MQ=255)                                                       aaCTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                                                                                                  <  1:503499/90‑1 (MQ=255)                                                         cTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTAc                                                                              <  1:1319049/139‑1 (MQ=255)                                                         cTCCGGCACGATCTCGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTAc                                                                              <  1:441724/139‑1 (MQ=255)                                                              gCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAc                                                                         <  1:923002/139‑1 (MQ=255)                                                               cACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAcc                                                                        <  2:1251574/139‑1 (MQ=255)                                                                   aTCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGTTCATAG‑TTGGCAAAGTACCAGGCATCTTCTCGCGTCACCCACATGCTGTACTGCACCTggg                                                                    <  1:812485/139‑1 (MQ=255)                                                                      tcGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCa                                                                 >  1:475428/1‑139 (MQ=255)                                                                      tcGTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCa                                                                 <  1:428705/139‑1 (MQ=255)                                                                        gTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATg                                                               >  2:565613/1‑139 (MQ=255)                                                                        gTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTg                                                                      >  1:1093816/1‑132 (MQ=255)                                                                        gTCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTg                                                                      <  2:1093816/132‑1 (MQ=255)                                                                         tCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGt                                                                                                                                 >  1:451561/1‑73 (MQ=255)                                                                         tCAAAACTCGCCATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGt                                                                                                                                 <  2:451561/73‑1 (MQ=255)                                                                                     aTGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTa                                                  <  1:918114/139‑1 (MQ=255)                                                                                             ttCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGACATGTAAGCTGACTTTATGGCCTc                                           >  2:763227/1‑139 (MQ=255)                                                                                              tCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGa                                         <  2:21547/139‑1 (MQ=255)                                                                                                atcccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCAccc                                                                                         <  2:1077168/86‑1 (MQ=255)                                                                                                atcccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCAccc                                                                                         >  1:1077168/4‑89 (MQ=255)                                                                                                  tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCa                                                                                                                     <  2:133955/59‑1 (MQ=255)                                                                                                  tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCa                                                                                                                     >  1:133955/1‑59 (MQ=255)                                                                                                  tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTg                                                                                 >  1:611277/1‑95 (MQ=255)                                                                                                  tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTg                                                                                 <  2:611277/95‑1 (MQ=255)                                                                                                  cccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCa                                                                                                                     <  2:378810/58‑1 (MQ=255)                                                                                                  cccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCa                                                                                                                     >  1:378810/2‑59 (MQ=255)                                                                                                  cccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCAccc                                                                                         >  1:144817/2‑87 (MQ=255)                                                                                                  cccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCAccc                                                                                         <  2:144817/86‑1 (MQ=255)                                                                                                     gCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATg                                                                                    >  1:399541/1‑89 (MQ=255)                                                                                                     gCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATg                                                                                    <  2:399541/89‑1 (MQ=255)                                                                                                     gCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAaccacc                                  >  2:295398/1‑139 (MQ=255)                                                                                                      cTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCg                                 <  1:743247/139‑1 (MQ=255)                                                                                                      cTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TCGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCg                                 <  1:1334331/139‑1 (MQ=255)                                                                                                       tCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAg                                                                                                                            >  2:277027/1‑48 (MQ=255)                                                                                                       tCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAg                                                                                                                            <  1:277027/48‑1 (MQ=255)                                                                                                           tCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCg                            <  2:442201/139‑1 (MQ=255)                                                                                                              cGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGaa                         >  1:534507/1‑139 (MQ=255)                                                                                                                   tAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGt                                                                                              >  2:510036/1‑65 (MQ=255)                                                                                                                   tAATGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGt                                                                                              <  1:510036/65‑1 (MQ=255)                                                                                                                    aaTGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCAt                   <  1:302396/139‑1 (MQ=255)                                                                                                                     aTGCAGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATg                  >  1:167055/1‑139 (MQ=255)                                                                                                                         aGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATg                                                                                    >  2:425626/1‑69 (MQ=255)                                                                                                                         aGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATg                                                                                    <  1:425626/69‑1 (MQ=255)                                                                                                                         aGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCcaca                                                                                      >  1:299441/1‑67 (MQ=255)                                                                                                                         aGGCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCcaca                                                                                      <  2:299441/67‑1 (MQ=255)                                                                                                                           gCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCcac                                                                                       >  2:754993/1‑64 (MQ=255)                                                                                                                           gCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCcac                                                                                       <  1:754993/64‑1 (MQ=255)                                                                                                                           gCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGt                                                                                              >  2:747300/1‑57 (MQ=255)                                                                                                                           gCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGt                                                                                              <  1:747300/57‑1 (MQ=255)                                                                                                                           gCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTAtg                                                >  2:167155/1‑102 (MQ=255)                                                                                                                           gCCTTCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTAtg                                                <  1:167155/103‑2 (MQ=255)                                                                                                                             cTTCACGCTTAATCCTCGGTTCATAG‑TTGGCAACGTCCCAGGCATTTTTCCGCGTCACCACCATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCg          <  1:295398/139‑1 (MQ=255)                                                                                                                              ttCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                                                                         <  1:1330453/59‑1 (MQ=255)                                                                                                                              ttCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                                                                         >  2:1330453/1‑59 (MQ=255)                                                                                                                              ttCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCgg         <  2:44760/139‑1 (MQ=255)                                                                                                                              ttCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCgg         <  2:534507/139‑1 (MQ=255)                                                                                                                              ttCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCgg         <  2:571079/139‑1 (MQ=255)                                                                                                                              ttCACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCgg         >  1:810665/1‑139 (MQ=255)                                                                                                                                cACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAAt              >  2:451530/1‑132 (MQ=255)                                                                                                                                cACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAAt              <  1:451530/132‑1 (MQ=255)                                                                                                                                cACGCTTCATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGa       >  1:1237506/1‑139 (MQ=255)                                                                                                                                    cTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTa   <  1:572078/139‑1 (MQ=255)                                                                                                                                     ttCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAc  <  1:565613/139‑1 (MQ=255)                                                                                                                                       cATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATg                                                                                    <  1:621403/55‑1 (MQ=255)                                                                                                                                       cATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTAc                                                                              >  1:998489/1‑61 (MQ=255)                                                                                                                                       cATACGCGGGTCATAG‑TTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTAc                                                                              <  2:998489/61‑1 (MQ=255)                                                                                                                                          |                                                                                                                                       TGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCCATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAG‑TTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAC  >  NC_000913/566108‑566378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑