| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 35 (0.860) | 33/290 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 0 (0.000) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 58 (1.420) | 39/290 | 0.1 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 0 (0.000) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCC > CP009273/2282257‑2282537 | ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATaagg < 1:518287/143‑1 (MQ=255) tttATATGCTGTTCTCCGCCAGGATTGATTTTCGTCTTATTGGCGGTCCCATAAACCAGCTGGATATGTTTTTCGAGGACAACACCATCAACTGTCTCACCATGATCAACAGTTGATGACAATGCTAT‑GGGGGAATAGaagga > 1:583388/1‑143 (MQ=255) tatGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCCGCTGGATATCTTTTTCCAGGACAACACCATCCACTGTCTCACCATACTCAACAGTTGCTGCCAATGCTAT‑GGGTGAATATAAGGAAGGt > 1:16195/1‑143 (MQ=255) tGCTTTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATaa < 2:317695/149‑1 (MQ=255) cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCGTCAACTGTCTCACCATTCTCGACAGTTGATGCCAATGCTATGGGGTGTA‑ATAAGTAAGGTGCGAATAAGCGGGGAAAt > 2:147485/1‑149 (MQ=255) cAGGATTGATTTTCGCATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGa < 1:164868/143‑1 (MQ=255) ggATTGATTTTCATATAAATAGCCTGCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaaa < 1:131988/143‑1 (MQ=255) ggAGTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGaaa < 1:429203/143‑1 (MQ=255) tgattTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGCATAAGCGGGGAAATTCTTCTCgg < 2:390285/149‑1 (MQ=255) tttCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGGATAAGCGGGGAAATTCTtctc > 1:328152/1‑143 (MQ=255) ttGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa < 1:510350/143‑1 (MQ=255) ccATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttca < 1:32528/143‑1 (MQ=255) tGGGTATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTATAGGCTGACTAAGtcatttcatgaaatgactga < 1:154969/143‑12 (MQ=37) tGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGCATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGtt > 1:587605/1‑143 (MQ=255) tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCGGTCATCTCATTTCTTCATGTTTGAGCCGAtttt > 2:51564/1‑149 (MQ=255) ttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc < 2:18403/149‑1 (MQ=255) cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt > 1:375367/1‑143 (MQ=255) gACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTATCCCGTag > 2:364232/1‑148 (MQ=255) acCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt < 2:367475/149‑1 (MQ=255) tctcACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAAt > 1:633830/1‑143 (MQ=255) tACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGAc > 2:3696/1‑149 (MQ=255) tACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCACGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGCATCAGCCTAt > 1:427201/1‑143 (MQ=255) tCAACAGTTGATGCCAATGCTAT‑GGGTGAATACAACCACCGCGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACCTGCCTTGAATCAGCCTATTTa > 1:109608/1‑143 (MQ=17) aaCAGTTGATGCCAATGCTAT‑GGGTGATAACACGGAAGGTGCGAATAATCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTCAATTAGCCTATTTAGa < 1:133847/143‑1 (MQ=14) aaCAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa < 1:463158/143‑1 (MQ=255) gTTGCTGCCAATGCTAT‑GGGTGAATATAAGGCAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc < 2:472851/149‑1 (MQ=255) ttGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCAGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTTTTCg > 2:263311/1‑149 (MQ=255) gCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCGTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAtt > 2:482937/1‑149 (MQ=255) cAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGAGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCACGTCAATGCCTTGAATCAGCCTCTTTATACCGTTTCTTCGc > 1:245415/1‑143 (MQ=14) aaTGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa > 2:644357/1‑149 (MQ=255) cTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCg < 2:585313/149‑1 (MQ=40) tAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTa > 1:202684/1‑143 (MQ=39) ggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc < 2:641898/149‑1 (MQ=35) tGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTTTccc > 2:199293/1‑149 (MQ=21) tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATc < 1:263582/143‑1 (MQ=31) | TTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTAT‑GGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCC > CP009273/2282257‑2282537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |