| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | 53.7% | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 56 (0.800) | 45/270 | NT | 57.0% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 41 (0.600) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 39 (0.560) | 28/270 | NT | 48.0% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 41 (0.600) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
Only 100 of 162 total aligned reads displayed.
ACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACT > CP009273/2400112‑2400408 | aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 1:216383‑M2/146‑149 (MQ=255)aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa > 1:171449‑M2/146‑149 (MQ=255)aactggggacaacgccttncatggcgaagaatcggtctaaataggctgnttcaaggcatttacgggagaaaacatcggctcaaacattaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:1152809‑M2/4‑1 (MQ=255)aactggggacaacgacttaaatggcgaagaaacggtctaaacaggctgagtcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa < 1:41471‑M2/4‑1 (MQ=255) gctagggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa < 1:1064230‑M2/5‑1 (MQ=255) cctggggaccacgccttaaatggctaagaaaccgtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa < 1:351787‑M2/5‑1 (MQ=255) actggggataacgctttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa < 1:1039761‑M2/5‑1 (MQ=255) actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa > 1:34661‑M2/145‑149 (MQ=255) actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa > 1:1256573‑M2/145‑149 (MQ=255) tggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgccccttccCTaaaaa > 1:228506‑M2/143‑149 (MQ=255) tCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAg < 1:862611/149‑1 (MQ=255) cATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTaa < 2:461867/143‑1 (MQ=255) gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaaa > 2:295700‑M2/139‑143 (MQ=255) tatctTATCACTTACTGGCGGATCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtg > 1:378519‑M2/1‑141 (MQ=255) tatCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCg > 2:587577/1‑143 (MQ=255) ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTcaca > 1:1128907‑M2/132‑149 (MQ=255) atCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACCCAAACAAGCAATGCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACGAAtgaaagggcgaaca < 1:122345‑M2/149‑15 (MQ=255) tCACTTACTGGCGGCTCATACTGAGCTGGTTCATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCCCTAAAAAAGCGAc > 2:596970/1‑143 (MQ=255) tCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGTTATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACAt > 1:577732/1‑149 (MQ=255) tCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaa > 1:1167505‑M2/1‑134 (MQ=255) ttACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggagggtgcgaacaagtcc < 1:1220283‑M2/149‑20 (MQ=255) aatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGtt < 1:87119‑M2/23‑1 (MQ=255) cTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctc < 1:511667‑M2/149‑23 (MQ=255) tGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGCCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTg > 2:798269/1‑143 (MQ=255) gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTg > 2:1001844‑M2/123‑143 (MQ=255) gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTg > 2:404788‑M2/123‑143 (MQ=255) cgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGtt > 1:176133‑M2/122‑149 (MQ=255) gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCg < 2:553352‑M2/26‑1 (MQ=255) tACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTta‑ta < 2:180456/143‑1 (MQ=255) tACTGAGCTGGTGAATGCTGTGCACATACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTGTCATCCGGAACCCGGACGAATGTAAAAATGCATATGAGTTGCACGAAAAAAGCGACTCACATTGTTCCGTta‑ta < 2:616269/143‑1 (MQ=255) agtgaGCTGGTTAATGCTGTGCACCCACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGGTGCATCCGGAACCCTGTCGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatga > 2:98948‑M2/3‑115 (MQ=255) gAGCTGGTTACTGCTGTGCACACACAAAGAAGCAATTCCAGTGGGGATGGGCCGTCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtt > 1:61532‑M2/1‑112 (MQ=255) cTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAg > 1:801934/1‑149 (MQ=255) gctgattcaaggcatttacgggagtaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATca > 1:971195‑M2/102‑149 (MQ=255) tgattcaaggcatttacgggagaaaaaatcggctcaaacataaagaaatgaaatgactgagtcagccgagatgaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATcaca > 1:935421‑M2/100‑149 (MQ=255) tGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGAAAAAATGCATATGCGCTGCACTAAggaaggtgcgcacaagtccctgatatgagataatgcttgtcatctgga < 1:268339‑M2/149‑49 (MQ=255) ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGaa > 1:33797‑M2/97‑149 (MQ=255) gCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag > 1:54933‑M2/1‑100 (MQ=255) gCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag > 1:693527‑M2/1‑100 (MQ=255) gtgCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcaggtttgtcatctg < 2:68994‑M2/143‑47 (MQ=255) agacaaacacgcAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca > 2:181690‑M2/3‑91 (MQ=255) acaaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAg > 1:727071/1‑149 (MQ=255) aaacaaGCAATTCCATTTGTAACGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:152664/149‑1 (MQ=255) gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCCAAGAATATATCtt > 2:856200‑M2/83‑143 (MQ=255) aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagataatgtttgtcctctggagccatagaacaggtt < 1:26298‑M2/149‑64 (MQ=255) ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtgagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTAAAATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTc > 2:798219‑M2/82‑143 (MQ=255) caaGCAATTCCATTTGTAATGGTCCTCCCTGGCATTTTCATCCGGAACCCGGACGCAAGCAAAAATGCATATGCGTTACGATAACCTCCCAACCCACATTGTTCCGGTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCa < 2:984638/143‑1 (MQ=255) aaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg > 1:1147566/1‑149 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgggtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCgcc > 1:48445‑M2/78‑148 (MQ=255) tttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCCCTAAAAAAGCGACTCACATGGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCatat > 2:1059992/1‑143 (MQ=255) ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGACCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTaa < 1:645899/149‑1 (MQ=255) ttGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatga > 2:976591‑M2/1‑71 (MQ=255) cgcaaacatgaagaaatgaaatgacggagtcagccgagaagaatttccccgcttatgcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTaa < 1:90390‑M2/82‑1 (MQ=255) gTAATGTGCCTCCCGGGCATTTTCGTCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCCCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa > 1:807410‑M2/1‑69 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCAAAGACTATATATTCCGGGATCGCATATCGAt > 2:185985‑M2/65‑143 (MQ=255) acatgaagagatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGAGACTCACAATGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCGATTa < 2:659560‑M2/81‑1 (MQ=255) aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacta > 1:1026378‑M2/1‑66 (MQ=255) tgCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa > 2:629425‑M2/1‑63 (MQ=255) ccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactca < 2:500503/143‑1 (MQ=255) aatgaaatgactgggtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt < 1:35870‑M2/96‑1 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt > 1:450777‑M2/54‑149 (MQ=255) tgaaatgactgagacagccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAGGTCGGTCACATAATATATCTTCAGGGATCGCATACCTATTATGTTACCCACTCTTTTc > 1:890067‑M2/52‑149 (MQ=255) ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCt > 1:1226429/1‑149 (MQ=255) ggCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCt > 1:1194512/1‑149 (MQ=255) ggCAGTTTCATCCGGAACAAGGACGAAAGGAAACATGCATCTGTAAATCACTAATAAAGCCGCCTAGATTGTGCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTcg > 1:954178/1‑148 (MQ=255) gCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAcgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcataatgagtcatcaacttaccttcgccgaca > 1:732311‑M2/1‑53 (MQ=255) aatgactgagtcacccgagaagaatttccccgctgattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCTCTCtt < 2:929926‑M2/95‑1 (MQ=255) ttCATCCGGAGCCCTGACGAAATTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCTTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAt < 1:763091/149‑1 (MQ=255) tCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAGTATATCTTCAGGGATCGCATATCTATTAACTTACTCACTCTTTTCTATTTATg < 1:714253/149‑1 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa > 2:439743‑M2/1‑42 (MQ=255) cGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCGTATCTATTAAGTTACTCACTCTTTTCTATTTATAACATg > 1:969143/1‑149 (MQ=255) ccgagaagaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTGCCGTTA‑TAATGGCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTAGGacatgaccg > 1:479789‑M2/35‑145 (MQ=255) aCCAGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtaagtgat > 2:105254‑M2/1‑38 (MQ=255) cccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa < 1:645336‑M2/149‑113 (MQ=255) ccGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACGCTTTTCTATTTATGACATg > 2:263995/1‑143 (MQ=255) cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAgcaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca > 2:127676‑M2/1‑35 (MQ=255) gaatttccccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATgcgcgc > 2:284494‑M2/28‑142 (MQ=255) cGAAAGTAAAAATGCATATGATTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa > 2:823779‑M2/1‑31 (MQ=255) ttccccgcttattcgcatcttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaa < 1:46697‑M2/126‑1 (MQ=255) aGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGCATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACCTGCGCGTGttt < 2:874572/143‑1 (MQ=255) tccccgcttattcgcaccttccCTAAAAAAGCGACTCACATCGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTg < 2:656435‑M2/121‑1 (MQ=255) gTAAAAATGCATATGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga > 1:71282‑M2/1‑26 (MQ=255) tAAAAATGCATATGAGTTGCACTAAAAAAGCGACCCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTGACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat < 1:310235/149‑1 (MQ=255) caaacaTGCATATGAGTTGCACTAAACAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGAACACAGAATATATCTTCAGGGACAGACTCGCTATCAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaat < 1:1015792/148‑1 (MQ=255) ccgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtcaatgt > 1:139991‑M2/20‑149 (MQ=255) cgcttattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTCGATCACAGAATATATCTTCAGTGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaaagta > 1:629211‑M2/19‑149 (MQ=255) tattcgcaccttccCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtcaatg > 2:1043721‑M2/15‑143 (MQ=255) gCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGCCATGCGCGTGTTTGTAtaaatg > 2:935927/1‑143 (MQ=255) atatGAGTTGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggctcatcatgagttatcaacttaccttcgccgacagtgaattcagaggtaagcgccgtcagaccag < 2:934790‑M2/143‑128 (MQ=255) ggcaccttccCTAAAAAAGCGACGCCCATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGACCGCATATCTATTAAGTTACTCACTCTTGTCTACTTATGACATGCGCGTGTTTGTAtaaatgtaaa < 2:275209‑M2/133‑1 (MQ=255) cgcaccttccCTAAAAAAGCGCCTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaa < 2:275567‑M2/133‑1 (MQ=255) cgcaccttccCTAAAAAACCGACCCACATTGTTCCGTTA‑TGATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTAtaaatgtaaa < 2:242250‑M2/133‑1 (MQ=255) accttccCTAAAAATGCGACTGGTATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGTTCGCATGTCGATTAAGTTACTCACTGTGGTCTATTTATGACATGCGCGTGTTTGTATaaatgtaaatgt < 2:40712‑M2/136‑1 (MQ=255) ccttccCTAAAAAAGCGACTCACATTGTT‑AGTAACGAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAAtgtg > 2:1108560‑M2/7‑143 (MQ=255) ttGCACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtgagcgccgtcagaccagaaaagagattttc > 1:375730‑M2/1‑9 (MQ=255) gCACTAAAAAAGCGGCTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTTCTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGt < 1:568142/149‑1 (MQ=255) cCTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTc > 1:836666‑M2/2‑149 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt < 2:23123‑M2/143‑139 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt < 2:323684‑M2/143‑139 (MQ=255) aCTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgccagaccagacaagagatgt < 2:139263‑M2/143‑139 (MQ=255) | ACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTA‑TAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACT > CP009273/2400112‑2400408 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |