New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 504218	79 (1.470)	3 (0.060) +AATGGTGCTCGGA	3/264	7.7	4.0%	noncoding (181/236 nt)	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences	REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences
	?	CP009273	= 504274	NA (NA)					intergenic (+259/+57)	ybaQ/copA	putative DNA‑binding transcriptional regulator/copper transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGT  >  CP009273/504131‑504422                                                                                                                                                  |                                                                                                                                                     cccaaaCCGCAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCAt                                                                                                                                                 <  1:345569/145‑1 (MQ=255) ccTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCAt                                                                                                                                                 <  1:910709/149‑1 (MQ=255)        cGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTcaa                                                                                                                                          >  1:59288/1‑147 (MQ=255)         gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt                                                                                                                                         <  1:466147/149‑1 (MQ=255)          tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCg                                                                                                                                              >  2:185906/1‑143 (MQ=255)          tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATg                                                                                                                                        <  1:260172/149‑1 (MQ=255)           aGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTCTTTTTCGTTCCCTGGCCCG‑ATTCCGTTATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc                                                                                                                                       <  1:901423/149‑1 (MQ=17)            ggCCGTATAAGGCTGTTACGTCGCATCCGGGATCAGAGCATCATTGCCTGATGCGACGCTT‑AGGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTc                                                                                                                                            <  2:46355/143‑1 (MQ=14)             gCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa                                                                                                                                     >  1:375182/1‑149 (MQ=255)             gCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCa                                                                                                                                     >  1:385453/1‑149 (MQ=255)               cGGATACGGCGTTTACGCCGCATCCGGCATCCGAGCACCCTTGCCTGATGCTTCGCTT‑ACGCGTCTTATCAGGCCTACTAACCTGTTCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt                                                                                                                                         <  2:804615/143‑1 (MQ=17)               cGGATAAGGCGTTTACGCCGCATCCGGCATCAGCGAGACGTTGGCTGATG‑GTGGTTTCTCTCTTCTTATCAGGCGTCCATACCTGTGTCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGAt                                                                                                                                         <  2:804612/143‑1 (MQ=9)                 gATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTGGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCAAGATTCGATGc                                                                                                                                       >  2:840422/1‑143 (MQ=255)                 gATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGc                                                                                                                                       <  2:514934/143‑1 (MQ=255)                    aaGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTTGGCCG‑CATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATgcgc                                                                                                                              <  1:630825/149‑1 (MQ=255)                        cGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCTG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCAcc                                                                                                                          <  1:3108/149‑1 (MQ=255)                               gccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagc                                                                                                                   >  1:565663/1‑149 (MQ=255)                               gccgcATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAAGCGTTTACGCCGCATCCGGCAGTCATACGTCGATGCCAAATGCGCCAccc                                                                                                                         >  2:83289/1‑143 (MQ=255)                                  gcatccggcatccgTGCACCATTGCCTGATGCGACGCTT‑ACGCGTCGTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagcagc                                                                                                                <  1:42130/149‑1 (MQ=255)                                   catccggcatccgAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCCaaa                                                                                                                     >  2:441411/1‑143 (MQ=255)                                     tccggcatccgAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAagc                                                                                                                   <  2:625833/143‑1 (MQ=255)                                      ccggcatccgAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCCGGCCTACAAACCTGTGCCTGAACCGCAGGCCG‑GACAAGGCGTTTACGCCCCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCCAAagca                                                                                                                  >  2:546552/1‑143 (MQ=18)                                        ggcatccgAGCACCATTGCCGGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATcc                                                                                                          <  1:142592/149‑1 (MQ=255)                                                 gCACCATTGCCGGATGCCGCGCTT‑ACGCGACTTAGCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCa                                                                                                       <  2:365251/143‑1 (MQ=21)                                                    ccATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAatg                                                                                                    <  2:383082/143‑1 (MQ=255)                                                        tGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTAt                                                                                          <  1:467159/149‑1 (MQ=255)                                                            tGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCTTGCACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCt                                                                                      >  1:181363/1‑149 (MQ=255)                                                            tGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCGATGATGTACTTATTCCt                                                                                      >  1:386577/1‑149 (MQ=255)                                                            tGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCt                                                                                      >  1:543035/1‑149 (MQ=255)                                                             gATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGCCATGCGTCGATGCCAAATGCGCCCCCCTAAAGCAGCGCATCCGCAATGATGTACTTa                                                                                           >  2:83983/1‑143 (MQ=255)                                                               tGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAAGGATGTGCTTAtc                                                                                         >  2:268351/1‑142 (MQ=255)                                                                 cGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTcc                                                                                       >  2:245685/1‑143 (MQ=255)                                                                  gACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGGGTCGATGCCAAAGGCGCCACCCTAAAGCAGCGCATCCGCAAGAGTGTAATTATTCCt                                                                                      >  2:555098/1‑143 (MQ=21)                                                                  gACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGtt                                                                                >  1:879451/1‑149 (MQ=255)                                                                     gCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCg                                                                                   >  2:565881/1‑143 (MQ=255)                                                                        t‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGGAGGCTG‑GATAATGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACTCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGtt                                                                                <  2:548749/143‑1 (MQ=255)                                                                            gcgTCTTCTCAGGCCCACAAACCTGTGCCTGAACCGTAGGCCG‑CATAAGTCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTaa                                                                             <  2:711223/143‑1 (MQ=255)                                                                                cTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACGGCAGCaa                                                                   >  1:468838/1‑149 (MQ=255)                                                                                 ttATCAGGCCTACAAACCTGTGCCTGAACCGGAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAAc                                                                  <  1:122878/149‑1 (MQ=255)                                                                                 ttAGCAGCCCTCCAAACCTGTGCCTGTACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAAc                                                                  <  1:438591/149‑1 (MQ=255)                                                                                    tCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCgg                                                               <  1:756365/149‑1 (MQ=255)                                                                                     cAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCCGCAACCGGt                                                              >  1:791875/1‑149 (MQ=255)                                                                                       ggCCTACAAGCCTGGGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAAc                                                                  <  2:170700/143‑1 (MQ=255)                                                                                        gCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGACAAATGCGCCACCCTAAAGCAGCGCATCCGCAACGATCTACTTATTCCTTCGGTTTAAACCGCAGCAAcc                                                                 >  2:497401/1‑143 (MQ=255)                                                                                          cTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCgg                                                               <  2:45276/143‑1 (MQ=255)                                                                                          cTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCgg                                                               <  2:830311/143‑1 (MQ=255)                                                                                          cTACAAACCCTGGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCgg                                                               <  2:603289/143‑1 (MQ=255)                                                                                           tACAAACCTGTGCCTGAACCGTAGATCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGt                                                        >  1:462403/1‑149 (MQ=255)                                                                                            aCAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGtt                                                             >  2:635464/1‑143 (MQ=255)                                                                                            aCAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGtt                                                       <  1:771436/149‑1 (MQ=255)                                                                                              aaaCCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTgg                                                           >  2:686714/1‑143 (MQ=255)                                                                                              aaaCCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTAc                                                     >  1:97561/1‑149 (MQ=255)                                                                                                    gtgCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTa                                               <  1:840675/149‑1 (MQ=255)                                                                                                       ccTGAACCGTAGGCCG‑GATAAGACGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTCAAGCAGCGCATCCGCAATGATGTACTTATTCCTTAGGTTTAAACAGCAGCAAACGGTTGGCGTTACTCACTACgc                                            >  1:816302/1‑148 (MQ=39)                                                                                                       catGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCa                                                  <  2:100689/141‑1 (MQ=255)                                                                                                        cTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGt                                           >  1:354523/1‑149 (MQ=255)                                                                                                           aaCCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTAc                                              >  2:200728/1‑143 (MQ=255)                                                                                                             ccGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGAGTTACTCACCACGGTAATcc                                      >  1:690893/1‑148 (MQ=255)                                                                                                             ccGTAGGCCG‑GATAAGGCGTTTACACCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATcg                                      >  1:683571/1‑149 (MQ=255)                                                                                                                 ctgCCG‑GATGCGGCGTAAACGCCTTATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAAt                                        >  2:821660/3‑143 (MQ=255)                                                                                                                 aGGCCG‑GATAAGGCGTTTACGCCGCAGCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATcgacga                                  <  1:709528/149‑1 (MQ=255)                                                                                                                    ccG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCCATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATcga                                     <  2:613632/143‑1 (MQ=255)                                                                                                                    ccG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACgagac                               >  1:338891/1‑148 (MQ=255)                                                                                                                     cG‑GATAGGGCGGTAACGCCGCCTCCGTCACTCATGCGTCGATGCCAAATGCGCCACCCTCAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCACCAACCGGTTGGCGTTACTCACTACGGGAATcgct                                    >  2:485357/1‑141 (MQ=255)                                                                                                                     cG‑GACAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATcgac                                    <  2:652381/143‑1 (MQ=255)                                                                                                                      g‑gATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATcgacg                                   <  2:197921/143‑1 (MQ=255)                                                                                                                      cgactAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATcgac                                    >  2:510133/5‑143 (MQ=255)                                                                                                                        gATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACGACGGTAATcgacga                                  <  2:508393/143‑1 (MQ=255)                                                                                                                                gTTTCCGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTAAAACCGCGGCAACCGGCTGGCGTTACCCACTACGGTAATCGCCGAGACCGCCATTGCCg                    >  1:530182/1‑149 (MQ=255)                                                                                                                                  aaacgccttaTCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCt                  >  1:86668/10‑149 (MQ=255)                                                                                                                                    aCGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCTATCAGTAAAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTcc                <  1:856997/149‑1 (MQ=255)                                                                                                                                    aCGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGc                      <  2:155692/143‑1 (MQ=255)                                                                                                                                      gcggcATCCGGCAGTCAGTCGTCGATGCCAAAGGCGCCACCTTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCGGCAACCGGTTGGCGTTACGCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCgg              <  1:93006/146‑1 (MQ=255)                                                                                                                                         gcATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTc                 >  2:687801/1‑143 (MQ=255)                                                                                                                                                  aGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGt  >  1:767956/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CCTGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATCCGAGCACCATTGCCTGATGCGACGCTT‑ACGCGTCTTATCAGGCCTACAAACCTGTGCCTGAACCGTAGGCCG‑GATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTACTTATTCCTTCGGTTTAAACCGCAGCAACCGGTTGGCGTTACTCACTACGGTAATCGACGAGAGCGCCATTGCCGCTCCGGCAACTACCGGGT  >  CP009273/504131‑504422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.