| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 2,421,172 | A→C | D33E (GAT→GAG) | argT ← | lysine/arginine/ornithine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,421,172 | 0 | A | C | 97.5% | 463.5 / NA | 164 | D33E (GAT→GAG) | argT | lysine/arginine/ornithine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (1/0); major base C (80/79); minor base G (3/1); total (84/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 164 total aligned reads displayed.
TCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTT > CP009273/2421027‑2421317 | gcggtggtgcgttCATCGCGTCAAAGTCACGGGCAACCCGGGACCATTTCACCTGCATCCGTTTGCAAATCTCGTTACCGAGATCGATATCAAGGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCg < 1:2093037/137‑1 (MQ=255) ggggATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCTATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGa < 2:1948558/149‑1 (MQ=255) gggATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TAACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTGTCGGTTCCggt > 2:84228/1‑147 (MQ=255) ggATCTTCGCGTCAAAGTCACTGGCAACCCAGGTACATTTATCCTGAATGCGTTGACAGATTGCGTTACCGAGGTCGTTGAAAAATCCGACAGAT‑GCATCTTTATTATCGTTCAGTGAGAGCGGTTCGTAGGTGGTCTCGGTTCCGATa < 1:1244065/149‑1 (MQ=255) gATCAGCGCGTAAAAGTCATTGGCAACCCAGGTATATTTCACCTGCATCCGTTTGCACATCTCGTTACAGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATAc < 2:777468/149‑1 (MQ=255) aGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAACC‑ACACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTAc < 2:1415422/149‑1 (MQ=255) gcgTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTAGCGAGAGCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGGGAACGGTGGGTAGGTGGTCTCGGTTCCGATGCGTACCGt > 2:1552597/1‑149 (MQ=255) cAAAGTCACTGGCAACCCAGGTACATTTCGCCTCCATCCGGTTGCACAACTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGACCGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTcc < 2:2345809/149‑1 (MQ=255) aaaGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATCCGTACCGTCTCCg > 2:1494135/1‑149 (MQ=255) atgTCACTGGCAACCCAGGTACATTGCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCCTTCGATGAGAACGGTGCGTAGGTCGTCTCGGTTCCGATACGTACCGTCTCCgg < 1:2336259/147‑1 (MQ=255) aGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATAAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGtttacgaa > 2:914823/1‑142 (MQ=255) aCTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTAGCGAGATCGATCTCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCCCGGTTCCGACAGGCACCGTCACCGGTAgca > 1:639858/1‑148 (MQ=255) cTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAgcgc < 2:256695/149‑1 (MQ=255) tGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGACCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGcgcc > 1:1427655/1‑149 (MQ=255) cccTGGTACATTTCACCTGGATTCGTTTGCACCTCCCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAg < 1:2591992/149‑1 (MQ=255) cccAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAg > 2:2229555/1‑149 (MQ=255) ccAGGTACATTCCACCTGCATCCGTTTGCACATCTCGTAACCGAGAGCGATACCAAAGCCAACAAAA‑TCACCTTTAGCCTCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGc < 1:1976661/149‑1 (MQ=255) cacgTACATTTCACTTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCt < 1:1904756/146‑1 (MQ=255) ggTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGGACCGTCTCCGGTAGCGCCGCATAGCTgg < 1:216419/149‑1 (MQ=255) gTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGa > 2:2303671/1‑149 (MQ=255) tACATTTCACCTGCCGCCGTCTGGACTTCGGGGTACCGAGACCGTTATCAAACTCAAGCAAA‑TCACCTTTAGCATCTTGCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACATACCGTCTCCGGTAGCGCCGCATAGCTGGaa < 1:2420041/149‑1 (MQ=255) tACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGaa > 1:2169351/1‑149 (MQ=255) actgttCACCTGGCTCCGTCTGCACATCTCGTTACCGAGATCGATAGCAAAGCCAACAAAA‑TCACCTTGCGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAg < 1:422483/145‑1 (MQ=255) aCATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCCCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAg < 1:1305675/149‑1 (MQ=255) aCATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATTGCTGGCAg > 2:37681/1‑149 (MQ=255) aCATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAg < 2:181891/149‑1 (MQ=255) aCATTTCACCTGCATCCGTTTGCACATCCCGTTACCGAGATCGATATCAAAGCCAACAAAC‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGCAGGTGGTCGCGGTTCCGGTCCATCCCGTCGCAAGTAGCGCCGCAGCACTGGAAg > 1:1495487/1‑149 (MQ=255) cATTTCCGCTGCCTCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAACA‑TCTCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGc < 1:182308/149‑1 (MQ=255) cATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGCCTCCGGTAGCGCCGCATAGCTGGAAGc > 2:1884204/1‑149 (MQ=255) ttCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGc > 2:1541816/1‑149 (MQ=255) ccTGCATCCGTTTGCACATCTCGTTACCGAGATCCATTTCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCtgtg < 2:1155174/149‑1 (MQ=255) cTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCCAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGCTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCCCCTAGCTGGCAGcaggtaggc > 2:2368804/1‑141 (MQ=255) gCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCTATGAGAACGGTGCGTAGATGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCACCGCATAGCGGGAACACGGTGTGgag > 1:1085719/1‑149 (MQ=255) gCATACGTATGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGgag < 2:2121971/149‑1 (MQ=255) gTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGCGAGACCg > 2:319296/1‑149 (MQ=255) gTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGACGCCTAGCTGGAAGCCGCCGTGGAAAGAACg > 1:1127152/1‑149 (MQ=255) tttGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGCTGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATGCGTACCGTCTCCGGTAGCGCCGCATAGCTGGCAGCCGCCGTGGGGAGACCgc > 1:756647/1‑148 (MQ=255) ttGCCCATCCCGTTAGCGAGATCGATATCAAAGTCTACGAAC‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGAc < 1:1086898/149‑1 (MQ=255) gtGCACATCCCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGAc < 2:1450527/148‑1 (MQ=255) tGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACt < 2:1447633/149‑1 (MQ=255) tGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACt < 2:2252801/149‑1 (MQ=255) cacaTCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTaa > 2:1176827/1‑149 (MQ=255) cacaTCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTaa < 2:515281/149‑1 (MQ=255) acaTCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAAc > 2:1005893/1‑149 (MQ=255) acaTCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGGGGAGAGACCGACTAAc > 1:206982/1‑149 (MQ=255) ttctcGGTAACGAGATCGATATCAAAGCCAACAAAA‑ACAGCTTTAGCATCTTCCGATGAGAACGGTGAGTAGATGGTCTCGGTTCCGCTATGTACCGTCTCGGTAAGCGCCACGTAGCTGGAAGCCGCGGGGGAGGGCCCGAccaccca > 1:398585/2‑143 (MQ=255) aTCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGCCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGCAAGCCGCCGCGGCGAGACCGACTAACaa > 1:1805496/1‑149 (MQ=255) aTCTCGTCACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGGCACGTACCGTCTCCGGTAGCGCGGGATAGCTACACACAGCTCCTGAGAGACCGAATAAcca > 1:2542450/1‑147 (MQ=255) tctcGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTGCGATGAGAACGGTGCGGAGGTGGTCCCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGAAAGCCGCAGTGGAAAGACCGAcaaacaaa > 1:2343889/1‑149 (MQ=255) gctcGTTCCCGAGATCGATATCAAAGCCAAAAAAACTCGCC‑TGAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTAGAAGCCGCCGTGGAGAGACCGACTAACaaa < 2:1392154/148‑1 (MQ=255) cccccttACCGAGATCGATATCAAAGCCAACAAAA‑TCCCCTTTAGCTGCTTTCGATGAGAACGGTGCACGGTTGGGCTCCGTTCCTTTCCCTACGGGCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACaaa < 2:2628909/144‑1 (MQ=255) tcGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCCACTTCAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCGGAGCAGCGACCGACAAACAAAGa > 1:2568615/1‑149 (MQ=255) tcGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCCTCGTTCGATGAGAACGGTGCGTAGATGGGCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCAGCTGTGGAGAGAGCGACTAACAgaga > 1:2659014/1‑149 (MQ=255) ttACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGTTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGCAGCCGCTGTGGAGAGCCCGACTAACAAAGCCag > 1:487260/1‑149 (MQ=255) tACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTCGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGCCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACaga < 1:1767718/149‑1 (MQ=255) aCCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTCGGGCCGCGTAGCTGGTAGCCGCTGTGGAGAGACCGACTAACAAAGACagag > 2:2195786/1‑149 (MQ=255) cGAGATCGATATCAAAGCCAACAAAA‑TCAACTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTGTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGGGAGACCGACTAACAAAGACAGAGCg > 2:1635037/1‑149 (MQ=255) aTCGATATCAAAGCCAAAAACA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGGGACCGACTAACAAAGACAGAGCGAGaa > 1:907645/1‑149 (MQ=255) tgATATCAACGCCACCCAAA‑GCACCGTTGGCGCCTTTCGATGAGAACGGTGCGTAGTTGGTCCCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATc < 1:379891/148‑1 (MQ=255) atatCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGGGCGAGAATCGa > 1:2178867/1‑149 (MQ=255) tatCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAGCGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACCGCACGAGAATCgcc > 1:1664726/1‑147 (MQ=255) taccAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGGGCGTAGGTGGCCGCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGAc < 2:1109859/146‑1 (MQ=255) tCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGGAGCCGCCGTGGAAAGACCGACTAACAAAGACAGAGCGAGAATCGCctt > 1:935755/1‑149 (MQ=255) tCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGActt < 2:1103924/149‑1 (MQ=255) tCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGAAGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGActt > 2:435940/1‑149 (MQ=255) acgCCAACAAAA‑TCACCTTGACCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCCCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGActtctt < 2:2465520/147‑1 (MQ=255) aaGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGActtctt > 1:2108524/1‑149 (MQ=255) gCCAACAAAA‑TCACCTTTAGCATCTTTCGCTGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAATGACAGAGCGAGAATCGACTTCTTca > 2:1631823/1‑149 (MQ=255) ccAACAAAC‑TCACCTTTAGCATCTTTCGATGGGAACGGTGCGTGGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTaat < 1:2458936/149‑1 (MQ=255) ccAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcat < 2:2418250/149‑1 (MQ=255) caacaaGA‑TCCCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcata < 1:84228/149‑1 (MQ=255) aacaaAA‑TCCCCTTTAGCATCTTTCGATGAGACCGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcatac < 1:914823/149‑1 (MQ=255) aacaaAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCGGCTGTGGAGAGACCGACTAACAAAGACAGAGAGAGAATAGAGTTGTTcctac > 1:2257097/1‑149 (MQ=255) aacaaAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcatac > 2:864007/1‑149 (MQ=255) aacaaAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcatac > 2:704796/1‑149 (MQ=255) acaaAA‑TCACCTTTAGCATCTTTCGATGAAACCGATCATTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGACTCCACTTCTTcataca > 1:1233306/1‑149 (MQ=255) caaAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTcatacat > 2:2426967/1‑149 (MQ=255) a‑tcatcTTTAGCTGCTTTCGATGAGACCGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGCAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAAcc < 1:2493952/149‑1 (MQ=255) acttttAGCATCTTTCGATGGGAACGGTGCGTAGCTGGTCTCCGCTCCGATACGGACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTc < 1:701287/146‑1 (MQ=255) aCCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGACACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTc < 1:2278216/149‑1 (MQ=255) cTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGTTCTCGGTTCCGCTACGTACCGTCTCTGGTGGCGCCGCATAGCTGGGAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGGGAGAATCGCCTTCTTCGTACATAACCCTCag > 2:446664/1‑148 (MQ=255) cTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATATATAACCCTCaa < 1:2147861/149‑1 (MQ=255) cTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACAAACAAAGAAGGAGCGAGAATCGACTTCTTCATCGATAACCCTCaa > 1:1063418/1‑149 (MQ=255) gtAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGt < 1:492696/148‑1 (MQ=255) tcgCATCTTTCGATGAGAACGGTGCGGAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTg < 2:313863/147‑1 (MQ=255) tAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTg < 2:175653/149‑1 (MQ=255) aGCATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGa < 2:2492513/149‑1 (MQ=255) cATCTTTCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGACAAAGGACGGCGCCGGTAGCCCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGaaa > 2:2631093/1‑149 (MQ=255) tCTTCCGATGAGAACGGTGCGTAGGTGGTCTCGGTCCCGACACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAAt < 2:71774/149‑1 (MQ=255) ttCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGc < 1:2178058/149‑1 (MQ=255) ttCGATGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGc < 2:2116308/149‑1 (MQ=255) tGAGAACGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTATCAATGCCAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCttttt < 2:2509527/149‑1 (MQ=255) agaACGGTGCGTAGGGGGTCACGGTTCCGATACGTACCGCCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTa < 2:1270951/149‑1 (MQ=255) aaCGGTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGGGAAAATGGCTCTTTTAtg > 2:1742214/1‑149 (MQ=255) gTGCGTAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGAGACCTATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTAtgttgt < 2:206982/149‑1 (MQ=255) tAGGTGGTCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGAAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGGTGTGTAtt > 2:1783019/1‑149 (MQ=255) tAGGTGGTCTCGGTTCCGATACGTACCGTCTACGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGCGTTTTTTAGGTTGTGTAtt > 1:1903914/1‑149 (MQ=255) ggtGTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAttgtgtt < 1:1852918/149‑1 (MQ=255) ggtCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAttgtgtt > 1:1425375/1‑149 (MQ=255) ggtCTCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTAttgtgtt < 1:1005893/149‑1 (MQ=255) | TCAGTGAGGGGATCAGCGCGTCAAAGTCACTGGCAACCCAGGTACATTTCACCTGCATCCGTTTGCACATCTCGTTACCGAGATCGATATCAAAGCCAACAAAA‑TCACCTTTAGCATCTTTCGATGAGAACGGTGCGTAGGTGGTATCGGTTCCGATACGTACCGTCTCCGGTAGCGCCGCATAGCTGGAAGCCGCTGTGGAGAGACCGACTAACAAAGACAGAGCGAGAATCGACTTCTTCATACATAACCCTCAAGTGAAAATGGCTTTTTTATGTTGTGTATTGTGTT > CP009273/2421027‑2421317 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |