New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1706351 =	37 (0.850)	4 (0.090)	4/284	6.2	9.8%	coding (572/636 nt)	nth	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
	?	CP009273	1706366 =	38 (0.900)					coding (587/636 nt)	nth	DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTT  >  CP009273/1706223‑1706509                                                                                                                                                 |                                                                                                                                                tCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAACATGCTTATATGCTAGTTTGCAGT‑GTCGGCGCCGCAGTGGTAGATCCTGGATGTGCGGAATACGTGCATTGCCCGCAAGGCGCGCTGTGGCGCTTGta                                                                                                                                            >  2:730497/1‑149 (MQ=255)                       gTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTtgt                                                                                                                           >  1:575947/1‑144 (MQ=255)                                gTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACata                                                                                                                  <  1:450510/144‑3 (MQ=255)                                gTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACaaa                                                                                                                  <  1:579145/144‑1 (MQ=255)                                   gaagaaAAGCTACTGAAGGTGGTTCAAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTtgtattcacaaagat                                                                                                               <  1:367995/144‑13 (MQ=255)                                    aagaaAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAgaga                                                                                                              <  1:13923/144‑1 (MQ=255)                                         taGCTACTGAAATTGGTTTCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGtt                                                                                                         <  1:294035/143‑1 (MQ=255)                                         gggctgctGAAGGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGtt                                                                                                         <  1:294090/142‑1 (MQ=255)                                         aaGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCCTTGGTTTATCCTGCACGGGCGTTATACCTGCTTTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGtt                                                                                                         <  1:37501/144‑1 (MQ=255)                                           gCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGa                                                                                                       >  1:253514/1‑144 (MQ=255)                                                  aaaGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTga                                                                                                <  1:555231/144‑1 (MQ=255)                                                  aaaGTGGTTCCAGCAGAGTGTAAAGTCGACTGC‑CAGCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTga                                                                                                <  1:253324/144‑1 (MQ=255)                                                      tGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTgaagaa                                                                                            <  1:153169/144‑1 (MQ=255)                                                         ttCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTa                                                                                    >  2:739930/1‑149 (MQ=255)                                                            catcagAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAgggg                                                                                      <  1:330267/141‑1 (MQ=255)                                                             agcagAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGCGAAAGTTGACATCTGAAGCAAAGGGGt                                                                                     >  1:682320/1‑144 (MQ=255)                                                                        aaGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACGTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGACGATCTTTGTGAATTCAAAGAGCAAGGTGACATCTGAAGAAAAGGAGTAACACCGATTa                                                                          >  1:333099/1‑144 (MQ=255)                                                                        aaGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCa                                                                     <  2:221482/149‑1 (MQ=255)                                                                           tCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCAGAAGAAAAGGGGTAACACCGATTAccc                                                                       >  1:377622/1‑144 (MQ=255)                                                                                  c‑caccaTTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGAt                                                                <  1:33109/144‑1 (MQ=255)                                                                                     accaTTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATaa                                                              >  1:379985/1‑144 (MQ=255)                                                                                      ccaTTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACctttc                                                        <  2:126449/149‑1 (MQ=255)                                                                                             ttGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACctttctt                                                      >  1:311383/1‑144 (MQ=255)                                                                                                 tCCTGCACGGGCGTTATACCTGCAGTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTAATGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATc                                                  <  1:386137/144‑1 (MQ=255)                                                                                                    tGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTa                                          <  2:399439/149‑1 (MQ=255)                                                                                                       aCGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCttt                                            <  1:122045/144‑1 (MQ=255)                                                                                                            cGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTGTAAAACATCt                                  >  2:73006/1‑149 (MQ=255)                                                                                                             gTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCtt                                 >  2:612276/1‑149 (MQ=255)                                                                                                              ttATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAACCATCttt                                >  2:195970/1‑149 (MQ=255)                                                                                                                  aCCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTATTTATCCTCTTTTAAAACATCTTTTTaa                            <  2:637979/149‑1 (MQ=255)                                                                                                                         ttGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACAACTTTTTAACg                          >  1:224191/1‑144 (MQ=255)                                                                                                                          tGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCAATGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAatg                    >  2:690809/1‑149 (MQ=255)                                                                                                                            cccGTAAGCCCCGTTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAatgat                  <  2:434841/149‑1 (MQ=255)                                                                                                                                   gCCCCGCTGTGGCTGTTGTATTATTGAAGATCTTTGGGAATACAAAGAGAAAGTTGACATCTGAAGGAAAGGGGTAACACCGATTACCCCATTGGTAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGCCAATGATGc                <  1:566558/144‑1 (MQ=255)                                                                                                                                    ccccGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGcc               >  1:395788/1‑144 (MQ=255)                                                                                                                                    ccacagcggggCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGc          <  2:286166/140‑1 (MQ=255)                                                                                                                                       cGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCAtt            <  1:320129/144‑1 (MQ=255)                                                                                                                                        gCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCCTTGCCAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTgagatc      >  2:357150/1‑144 (MQ=255)                                                                                                                                            tgGCTCTTGTATTATTGAAGATCTTTGCGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGtt  <  2:434171/149‑1 (MQ=255)                                                                                                                                                tctTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGt   <  1:567704/144‑1 (MQ=255)                                                                                                                                                 ctTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGtt  <  1:673094/144‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                TCAATTTGCGCCGGGGAAAAACGTCGAACAGGTAGAAGAAAAGCTACTGAAAGTGGTTCCAGCAGAGTTTAAAGTCGACTGC‑CACCATTGGTTGATCCTGCACGGGCGTTATACCTGCATTGCCCGCAAGCCCCGCTGTGGCTCTTGTATTATTGAAGATCTTTGTGAATACAAAGAGAAAGTTGACATCTGAAGAAAAGGGGTAACACCGATTACCCCATTGATAACCTTTCTTTATCCTCTTTTAAAACATCTTTTTAACGTCAATGATGCCATTGCTTAGCGTT  >  CP009273/1706223‑1706509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.