New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4578925	53 (1.220)	4 (0.100)	4/276	6.0	7.3%	intergenic (‑29/+21)	yjiX/yjiY	DUF466 family protein/putative transporter
	?	CP009273	= 4578929	51 (1.240)					intergenic (‑33/+17)	yjiX/yjiY	DUF466 family protein/putative transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGTAGAAGATGATGCTGTAC  >  CP009273/4578788‑4579072                                                                                                                                              |                                                                                                                                                 gATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGc                                                                                                                                          >  2:325216/1‑149 (MQ=255)         gtCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACg                                                                                                                                  <  2:237619/149‑1 (MQ=255)             taatatGCTCGCCGTAGTTGCCGTAGTCTGGAATGCCAATCCACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTa                                                                                                                              <  2:100303/147‑1 (MQ=255)               atatGCTCGCCGTAGTTGTCGTAGTCTGGAAAGCAAGGCAATCACTTCCCCGCCGGTACTAGATAGTTGTTTGCCGTTCCTAATTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACgt                                                                                                                                 <  1:496988/144‑2 (MQ=255)               atatGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAgt                                                                                                                            >  2:338689/1‑149 (MQ=255)                  cgCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAgtggt                                                                                                                         <  2:676020/148‑1 (MQ=255)                        aCGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATA‑TTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGc                                                                                                                       >  1:130912/1‑144 (MQ=255)                                  cGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAc                                                                                                         <  2:493457/149‑1 (MQ=255)                                     aGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgcc                                                                                                      >  2:241534/1‑149 (MQ=255)                                     aGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgcc                                                                                                      >  2:149546/1‑149 (MQ=255)                                         tGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGANATCTTCACGCCGCCt                                                                                                  >  2:563891/1‑149 (MQ=255)                                            taTGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgccgc                                                                                                    <  1:71950/143‑1 (MQ=255)                                            gaTGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCAcgccgc                                                                                                    <  1:143710/143‑1 (MQ=255)                                             aTGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCg                                                                                              <  2:161701/149‑1 (MQ=255)                                               gCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCtt                                                                                                 <  1:461367/144‑1 (MQ=255)                                                  aaTCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGAtt                                                                                         <  2:582028/149‑1 (MQ=255)                                                   aTCAACATCTTCGCCGCCTGGCCGAGTTATTTTTTTGCCTGTGCTAAGTGACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGCGGGGGCTAAACACGGTTAGTGGTGCGAAGCGATCTTCACGCCGCCTTACg                                                                                              <  1:627590/144‑1 (MQ=255)                                                       aCATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAAc                                                                                    <  2:640051/149‑1 (MQ=255)                                                        cATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACg                                                                                   <  2:118863/149‑1 (MQ=255)                                                              cgccgcCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGgt                                                                             >  2:663453/1‑149 (MQ=255)                                                                     tGGCCGAGATA‑TTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCttt                                                                     <  2:143369/149‑1 (MQ=255)                                                                      ggCCGAGATACTTTTTTGCCTGTCCTAAGTTACCACACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGtt                                                                          <  1:670252/144‑1 (MQ=255)                                                                        cggaggTAGTTTTTTGCCGTGCCTAAGTTACCAATCATATTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGGGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGt                                                                   <  2:297712/147‑1 (MQ=255)                                                                          gggaTATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGGAGC‑GGGGCTAATCACGGTTAGGGGTGCGGGGAGATCTTCACGTCGCCTTCCGGGATTGGAACGTACGGTGTTTCtt                                                                      <  1:136292/142‑1 (MQ=255)                                                                          gagaTATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCtt                                                                      <  1:218432/144‑1 (MQ=255)                                                                           agaTATTTTTTTGCCTGTCCTAAGTTACCAACCATAGCTCCCTCTGATTAGACCTAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCttt                                                                     <  1:476839/144‑1 (MQ=255)                                                                             atatTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGt                                                                   <  1:509962/144‑1 (MQ=255)                                                                              tatTTTTTTGCCTGTCCTAAGTTACCAAACAGAGTTCACTCTGATAAGCACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTAc                                                             <  2:489114/149‑1 (MQ=255)                                                                              tatTTTTTTGCCTGTCCTAAGTTACAAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTAc                                                             >  2:373532/1‑149 (MQ=255)                                                                               atTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACg                                                            >  2:307053/1‑149 (MQ=255)                                                                                        ccTGTCCTAAGTTACCAAACATAGTTCACTCCGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCt                                                   >  2:637200/1‑149 (MQ=255)                                                                                         cTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGGGTTTCTTTGTCAGTACGTTTGt                                                       >  1:230888/1‑144 (MQ=255)                                                                                         cTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGAACGGTGTTTCTTTGTCAGTACGTTTGTCGCTg                                                  >  2:698834/1‑149 (MQ=255)                                                                                                      ccAAACATAGTCCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCCTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTCGTCAGTACGTTTGTCGCTGTTACGCAc                                          <  1:313710/144‑1 (MQ=255)                                                                                                       cAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTTTTTCTTTGTCGGTACGTTTGTCGCTGTTACGCAcc                                         >  1:308388/1‑144 (MQ=255)                                                                                                         aaCATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGcc                                  >  2:303700/1‑149 (MQ=255)                                                                                                               gTTCACTCTGATAAGGACAAAGCCCCGCCGCAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGttt                            <  2:574914/149‑1 (MQ=255)                                                                                                                ttCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGtttg                           >  2:589712/1‑148 (MQ=255)                                                                                                                    ctctGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAACCACGGTTAGTGGTGCGAAGAGATCTACACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCAGCGCAAGCCAGGTTTTGaaa                       >  2:481352/1‑149 (MQ=255)                                                                                                                     tctGATAAGAACAACGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGtttt                           <  1:538004/144‑1 (MQ=255)                                                                                                                     tctGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGtttt                           >  1:630058/1‑144 (MQ=255)                                                                                                                      cgcataataGCAAAGCGCCTCTGAAGG‑TGGCCTAAACACGGTTAGTGTTGCGATGAGATCTTCACGCCGCCTTCCGGCATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAAcc                     <  2:156080/146‑1 (MQ=255)                                                                                                                       tGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCg                    >  2:466428/1‑149 (MQ=255)                                                                                                                        gATAACAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGTTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGt                   <  2:138542/149‑1 (MQ=255)                                                                                                                           aaGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAAcc                     <  1:384535/144‑1 (MQ=255)                                                                                                                            aGAACAAAGCCCCGCCGAAGC‑CGGGCTAAATACGGATAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCg                    <  1:652928/144‑1 (MQ=255)                                                                                                                              aaCAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCGGGTTTTGAAACCGTa                  >  1:601849/1‑144 (MQ=255)                                                                                                                                 aaaGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTCCGGCGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGTAGAAgatga          >  2:398828/1‑149 (MQ=255)                                                                                                                                   aGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGTAGAAGatgatg        <  2:159509/149‑1 (MQ=255)                                                                                                                                        cgccgAAGC‑GGGGCTAAACTCGGTTAGTGGTGCTGAGAGATCTTCACGCCGCCTTTCGGGATTGGCACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGTAGAAGatgatg        <  1:404818/144‑1 (MQ=255)                                                                                                                                         gccgAAGC‑GGGGCTAAACCCGGTTAGTGGTGCGGAGGTATCTCCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGTAGAAGATGATGCTGTac  <  2:322838/149‑1 (MQ=255)                                                                                                                                          ccgAAGC‑GGGGCTAAACACGGTGAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGTAGAAGATGATGCt      <  1:584084/144‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                 GATGGTTGGTCTTCATATGCTCGACGTAGTTGTCGTAGTCTGGAATGCCAATCAACATCTTCGCCGCCTGGCCGAGATATTTTTTTGCCTGTCCTAAGTTACCAAACATAGTTCACTCTGATAAGAACAAAGCCCCGCCGAAGC‑GGGGCTAAACACGGTTAGTGGTGCGAAGAGATCTTCACGCCGCCTTCCGGGATTGGAACGTACGGTGTTTCTTTGTCAGTACGTTTGTCGCTGTTACGCACCGCAAGCCAGGTTTTGAAACCGTAGAAGATGATGCTGTAC  >  CP009273/4578788‑4579072

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.