| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 468,144 | Δ1 bp | coding (91/339 nt) | glnK → | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 468,144 | 0 | A | . | 97.8% | 399.7 / 0.7 | 92 | coding (91/339 nt) | glnK | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base . (51/38); total (53/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCA > CP009273/468001‑468285 | aaTACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAAACAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATGCAGGGCCTGAACGTC‑CCGAAg > 1:1620836/1‑149 (MQ=255) gtACCTTCTTCGTGTGGCAGAACCATTACCGGATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGt < 2:1821732/148‑1 (MQ=255) cttcttCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGaaa > 2:1650193/1‑149 (MQ=255) cttcttCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGaaa > 1:500165/1‑149 (MQ=255) cttcttCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGaaa < 1:1558037/149‑1 (MQ=255) cttcttCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCACGACCTAACCGTC‑CCGAAGTGcaa > 1:1875422/1‑149 (MQ=255) ttcttcGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGGTAATCAAACCATTCAAGCTGGAAGAAGTTCGTGAAGCGTTATCTTGCATTGGTATTCAGGGCCTGAACGTC‑CCGAAGTGAAAg > 2:1784503/1‑149 (MQ=255) ttcGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGtt > 2:1816036/1‑149 (MQ=255) gCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGt < 2:1855255/149‑1 (MQ=255) cAGAACCATTACCGAATTCTGACCGCAGGGGATGTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGTAGCGTTACCTTCCATTGGTATTCAGGGCCTGCCCGTC‑CCGAAGTGAAAGGTTTCGGGCGTc < 1:1202445/149‑1 (MQ=255) aGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCa > 2:1892408/1‑149 (MQ=255) aaCCCTTACCGAAGTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTCATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGa < 2:1290130/149‑1 (MQ=255) aaCCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGGGACGGTGATAATCAAGCCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCGTCCATTGGTATTCAGGGACTGACCGTGA‑CGAAGTGAAAGGTTTCGGGCGTCAGa > 1:156229/1‑149 (MQ=255) ccATTACCGGATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATTTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGaaa < 2:647380/149‑1 (MQ=255) cATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGCTAATCAAACCATTCAAGCTGGTAGACGTTCGTGAAGCGTTATCTTCCATTGTTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAg > 1:100835/1‑149 (MQ=255) aTTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGTCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAGAgg > 1:1059744/1‑149 (MQ=255) ttACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGACGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAggg < 1:1370704/149‑1 (MQ=255) cGAATTCTGACCGGAGGGGCTCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGCAGTGAAAGGTTTCGGGCGTCAGAAAGGGCGTg > 2:1232629/1‑149 (MQ=255) cGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCTGGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATg > 2:416524/1‑149 (MQ=255) aTTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCg > 1:1223620/1‑149 (MQ=255) gcTGACCGGGGGGGATCTATGAAGCTGGTGACCGTGATAAACAAACGAGTCGAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCTGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAg < 2:1725578/148‑1 (MQ=255) tGACCGGAGGGGGTCTATGAAGCCGTTGACCGTGATCATCAAACCATTCAAGCCGGAAGACGTTCGTGAATCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCt < 2:1344615/149‑1 (MQ=255) ggccGGAGGGGTTCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTg < 2:443010/147‑1 (MQ=255) aGGGGATTTATGCGGCTGGTGGCCGTGATAATCAACCCATTCAAGCTGGAAGACGTTCGTGGAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCgg < 2:587649/149‑1 (MQ=255) ggATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAATCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACAggggg > 2:914833/1‑149 (MQ=255) ggATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGCTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCggggg > 2:914756/1‑149 (MQ=255) ggATCTATGAAGCTGGTGACCGTGATAATCAAACCATCCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGGGCTGAACCggggg > 2:914750/1‑149 (MQ=255) gctCTATGGAGCTGGTGACGCGGATAATCCTACCATTCAAGGCGGAGGTCGTTCGTGAAGCGTTATCTTCCATTGATATTCAGGGCCTTACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTTTACCgggggg < 1:319702/147‑1 (MQ=255) gATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCgggggg < 1:766949/149‑1 (MQ=255) tCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGCCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCg < 1:1262565/149‑1 (MQ=255) tCTATGAAGCTGGTGACCGGGATAATCAAACCATTCAACCTGTAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGTCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCgggggcgg < 1:856238/149‑4 (MQ=255) tCTATGAAGCGGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCg < 2:1283422/149‑1 (MQ=255) tctGAAGCTGGTGACCGTGATAATCAAACTATTCAAGCTGGAAGACGTTCGTGCAGCGTTATCTTCCATTGGTAGTCACGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGa < 1:413786/147‑1 (MQ=255) aaGCTGGGGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATAc < 2:291922/149‑1 (MQ=255) cTGGTGATCGTGATAATCAAACCATTCCAGCTGGAAGACGTACGTGAAGCGTTCTACCGCGTTGGTATTCAGGGCCTGACCGTC‑CCCAAGTGAAAGGTTCCGGTCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGc < 1:1918225/149‑1 (MQ=255) cTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGc > 2:1496639/1‑149 (MQ=255) cTGGGGACCGTGATAATCAAACCACTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGc < 1:1092401/149‑1 (MQ=255) ccGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAAtt < 1:980616/149‑1 (MQ=255) cGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACGGCGGCAAttt > 1:1643331/1‑149 (MQ=255) cGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACCGCGTCAAttt > 2:1593131/1‑149 (MQ=255) tGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGAGGCGGAATACAGCGTCAATTTcc > 1:1231401/1‑149 (MQ=255) tCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCaa > 1:63437/1‑149 (MQ=255) aaaCCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGGATACAGCGTCAATTTCCTGCCaaac > 2:1215809/1‑148 (MQ=255) aaaCCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCTaaaa > 2:1431260/1‑149 (MQ=255) aaaCCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCAAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCaaaa > 1:1383733/1‑149 (MQ=255) aaCCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAg < 1:1034234/149‑1 (MQ=255) aaCCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAg > 2:880207/1‑149 (MQ=255) aTTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCA‑CGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAGTACAGCGTCCAGTTCCTGCCGAAAGTaaa > 2:218681/1‑149 (MQ=255) cAAGCTGGAAGACGTTCGTGAAGAGTTATCTTCCATTAGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAAt > 1:1287393/1‑149 (MQ=255) aGCTGGAAGACGTTCGTGAAGCGTTATCTTCAATTGCATGATAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTg > 1:474497/1‑149 (MQ=255) cTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTCCCAAAAGTAAAAATTGAt > 2:563497/1‑149 (MQ=255) cTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATCCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGAt < 2:1757337/149‑1 (MQ=255) aaGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTgg < 2:1602659/149‑1 (MQ=255) aaGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGCCAGAAAGGGCATGCCGAGCGGTACCGGGGGGCGGAAAACAGCGTCAATTACCTGCCAAACGTAAACATTAAGGTgg > 1:1405935/1‑149 (MQ=255) aCGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGa > 1:996514/1‑149 (MQ=255) aCGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCGGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAAGACAGCGTCAATTTCGTGCCAAAAGTAAAAATTGATGTGGGGa > 2:1792803/1‑149 (MQ=255) cGTTCGTGAAGCGTTTTCTTCCATTGGTATTCAGTGCCTGACCGTC‑CCGAATTTAAAGTTTTCGGGCGTCAGAAATGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGAt < 1:1784503/149‑1 (MQ=255) gTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGCGCTGTACCGGGGGGCGGAATGCAGCGTCAATTTCCTGCCACAAGTAAAAAATGCGGTGGCGAtt > 1:87506/1‑149 (MQ=255) gTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGAtt > 1:1005250/1‑149 (MQ=255) ttCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGACATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTg > 1:148156/1‑149 (MQ=255) tCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGc > 2:632043/1‑149 (MQ=255) tCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGAGGTGGCGATTGc > 1:489900/1‑149 (MQ=255) gTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtg > 1:1819184/1‑149 (MQ=255) tGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtga > 1:1943299/1‑149 (MQ=255) gAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtgat < 2:1223620/149‑1 (MQ=255) gAAGCCTTATCTGCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCTGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtgat < 2:1422167/149‑1 (MQ=255) tATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAAc < 2:500165/149‑1 (MQ=255) tATCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGGAAAAATTGAGGTGGCGATTGCTGATGACCAAc > 2:1198026/1‑149 (MQ=255) aTCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTTATGACCAAcg > 1:61255/1‑148 (MQ=255) tCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTc > 1:91618/1‑149 (MQ=255) tCTTCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTc < 1:1181759/149‑1 (MQ=255) ttCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGa > 1:1772412/1‑149 (MQ=255) tgccATTGGTATTCCNGGCCTGACCGTC‑CTGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGAGGAATACAGCGTCGATGGCCTGTCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGa < 1:1844188/147‑1 (MQ=255) tCCATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACCGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGAt < 1:560036/149‑1 (MQ=255) tCCATTGGTATTCAGGGCCTGACC‑TGCCCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGAt < 2:922688/149‑1 (MQ=255) cATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGa > 1:241480/1‑149 (MQ=255) cATTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGa > 2:1829397/1‑149 (MQ=255) aatGGTATTCAGGGACTGACCGTC‑CCGAAGTGAAAGGGTGCGGGCGTCAGAAAGGGCATGCCGAGCTGTGCCGGGGGGCGGAAGACAGGGTCAATTTCCGGCCGAACGTAAAGATTGATGTGGCGGGTCCTGATGACCAAGTCGGTGaa > 2:325236/3‑149 (MQ=255) aTTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGaa > 2:1359886/1‑149 (MQ=255) aTTGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGaa > 1:1057567/1‑149 (MQ=255) tGGTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGt > 2:479969/1‑149 (MQ=255) gTATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGa < 1:1892408/149‑1 (MQ=255) tATTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGAt < 1:602160/149‑1 (MQ=255) aTTCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATc < 2:1270509/149‑1 (MQ=255) ttCAGGGCCTGACCGTC‑CCGAAGTGAACGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCg > 1:1857230/1‑149 (MQ=255) ttCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGAtgg > 2:588826/1‑147 (MQ=255) ttCAGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCg < 1:363179/149‑1 (MQ=255) aGGGCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGatc > 2:369921/1‑148 (MQ=255) ggCCTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATc < 1:1797716/149‑1 (MQ=255) ccTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGt < 1:1111956/149‑1 (MQ=255) cTGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCGGAGCTGTAGCGGGGGGCGGAATAGAGCGTAAATTTCCTGCCAAAAGTAAAAATTGATGTGGGGATTGCTGATGACCAACCCGATGAAGTGACCGATATAGTc > 1:433003/1‑149 (MQ=255) tGACCGTC‑CCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACTGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCa < 2:1287393/149‑1 (MQ=255) | AATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAGACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAAGTGATCGATATCGTCA > CP009273/468001‑468285 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |