| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 2,719,426 | T→C | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,719,426 | 0 | T | C | 96.6% | 243.0 / ‑2.1 | 89 | intergenic (‑321/+2) | kgtP/rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| Reads supporting (aligned to +/- strand): ref base T (1/2); new base C (51/34); total (53/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
GTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGC > CP009273/2719282‑2719568 | gTAGGGAAGTGGGCAAGTGGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATg < 2:710862/149‑1 (MQ=255) aGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCa < 2:1261524/149‑1 (MQ=255) gTGGGCAAGTTGGCGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAg > 1:1341684/1‑149 (MQ=255) gggCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGCCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGtt < 1:762460/149‑1 (MQ=255) ggCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGAGGCGTAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGGTc > 1:559472/1‑149 (MQ=255) gCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTcc > 1:791945/1‑149 (MQ=255) tgTTGGGGCTGTCGTATCCGTTGCCGACTATGGCATATGTGGGAGTATAAGACGCGCGGCGTCGCATCAGGTGTTTTTTTCTGCGCTAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTa < 2:1345141/148‑1 (MQ=21) ggggAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTGCGCATAATTCGATGCCTGGCAGTTCCCTActct > 2:504751/1‑149 (MQ=255) gcctaaTCCGTTGCTCAACCTGCCATATGCGGGCATAAAACACGCGCAACTTCCCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTCCGCATAATTCGATGCCTAGCAGTTCCCTACTCCCGCATg < 2:412696/144‑1 (MQ=17) gCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGGTGGCCTTTCGCATAATTCGGTGCCTGGCAGTTCCCTACTCTCGCATg > 1:550125/1‑149 (MQ=255) cGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGTATggg < 2:1643725/149‑1 (MQ=255) cGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATggg < 1:1359330/149‑1 (MQ=255) gTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTCCTCTCGCCTgggg > 1:1505656/1‑149 (MQ=255) gTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATgggg > 1:914930/1‑149 (MQ=255) tATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGga > 1:1737938/1‑149 (MQ=255) tATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGga < 2:1742548/149‑1 (MQ=255) aTCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGAGgac > 1:1903350/1‑148 (MQ=255) ccGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCAGCAGGCATTTTTTTCTGAGCCGATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAGTTCGATGCCTGGCAGTTCCCGACTCTTCCATGGGGAGAc > 2:240034/1‑149 (MQ=25) gTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTccc > 2:1772240/1‑128 (MQ=255) gTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTccc < 1:1772240/128‑1 (MQ=255) gTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAccc > 1:1253885/1‑149 (MQ=255) ttGCTGAATCTGGCATATGTGGGAGGATAAGACGCGCCGCGTCGCATCAGGCATTTTTTTCTGCGCTTATGCAGAAAGGCCATCCGTCAGGATGGCCATTCGCATAATTCGGTGCCTGGCAGTTCCCTACTCTCGCATGGGGGGAcccc > 1:868287/1‑149 (MQ=25) cTGAATCTGGCATATGTGGGAGTATAAAACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCCATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTCCTCTCGCATGGGGAGACCCcaca > 1:484026/1‑149 (MQ=255) aaTCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGCGACCCCACACtc > 2:1379728/1‑148 (MQ=255) gCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCg > 1:1619165/1‑149 (MQ=255) atatGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgc < 1:402342/149‑1 (MQ=255) tatGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCTAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCGCACGACCCTCgggg > 2:26813/1‑147 (MQ=25) atGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAGTGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCCGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgcgc > 1:1737792/1‑149 (MQ=255) atGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGgcgc > 1:446166/1‑149 (MQ=255) gtgGGAGTATAAGACGCGCAGCGTCGCATCAGGCACTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACCCTCGCATGGGGAGCCCCCCCACTACCATCGGCGCTa > 2:336346/1‑149 (MQ=25) gggggaagtgaaGACGCGCAGCGTCGCATCAGGCATTCTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTa < 1:798032/139‑1 (MQ=25) gggggAGGATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGTCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTa < 1:183754/147‑1 (MQ=255) ggAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACgg > 1:892325/1‑149 (MQ=255) gAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGGCCCCACACTACCCTCGGCGCTACCG‑c > 1:83877/1‑149 (MQ=255) ataAGACGCGCAGCGTCGCAGCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTCCTCTCGTATGAGGAGACCCCACACTACCATCGGCGCTACGG‑CGttt < 2:723780/149‑1 (MQ=25) tgcgacgctgcgCGTCGCATCAGGCATTTTTTTCTTCGTCATTGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTAACTAGTCTCGCCTGGCGAGTCCCCACACCACCATCGGCGCTACGG‑CGTTTc > 2:699109/12‑149 (MQ=18) taAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTTCTCCAATGCAAAAAAGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTc > 2:1231961/1‑149 (MQ=255) taAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCACGCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGGTTc > 1:1840811/1‑149 (MQ=25) gcgcAGCGTCGCATCAGGCATTTTTTTTTTTTTTTTTGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCGTAATTGGATGCCTGGCAGGTCCCTCCTCTCGCTTGGGGAGGCCCCACACTACCATCGGCGCTTCGG‑CGTTTCCCTTCt > 2:301511/1‑149 (MQ=18) gcgcAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCt < 2:422116/149‑1 (MQ=255) gcgcAGCGTCGCATCAGGCATTTTTTTCTGAGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCACACACTACCATAGGCGATACGG‑AGATTCACTTCt > 2:1354093/1‑149 (MQ=25) cgcAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTg < 1:1951143/149‑1 (MQ=255) gcAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGa < 2:547029/149‑1 (MQ=255) gcAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTATCGCATGGTTAAACTCCACACTACAGTCGGCGCTACGG‑CGTTTCACTTCTGa > 1:1517013/1‑149 (MQ=21) cggcGCTTCTGGCATTTTTTTGTGCGCCAAGGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGGCCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTc < 2:1622241/146‑1 (MQ=21) cGTCGCGTCCGGCATTTTTTTCCGCGCCAATGCAAATAGGCCATCCGTCAGGATTGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTc < 2:1370304/149‑1 (MQ=21) gTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCg < 2:635024/149‑1 (MQ=255) tCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCgg < 1:1400600/149‑1 (MQ=255) gCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCCTCGGCGCTACGG‑CGTTTCACTTCTGAGttaagta > 2:488554/1‑144 (MQ=255) cATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCAt > 1:27344/1‑149 (MQ=255) gCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCAGggggcc > 2:573275/1‑147 (MQ=255) cATTTTTTTCTGCGTCAATTCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGACAGTTCCCTACTCTCGCATGGGGAGACCCCACACTAACATCGGCGCTGCGA‑CGTTTCACTTCTGAGTTCGGAATggggctc > 2:1560550/1‑146 (MQ=21) aTTTTTTGCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAg < 1:410038/149‑1 (MQ=255) tttttttCTGCGCCAATGCAAAAGGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGGAGTTACCTACTCTCGCCTGGGGAGACCCCACACTACCATCGGCGCTGCGG‑CGTTTCACTTCTGAGTTCGGCATGGGGCCAgg > 1:1061540/1‑149 (MQ=21) tttCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTggg < 1:67181/149‑1 (MQ=255) tttCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTggg < 1:504751/149‑1 (MQ=255) tttCTCCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTggg < 2:449462/149‑1 (MQ=255) tCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCATTTCTGAGTTCGGCATGGGGTCAGGTGGGac > 1:1360427/1‑149 (MQ=255) cgcCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGCCCCCACACTACCATCGGCGCTCCGG‑CGTTTCACTTCTGAGTTCGGAAGGGGGTCAGGTGGGaccacc > 1:934304/1‑149 (MQ=18) gccggtGCAATGAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCGGTTCCCTACTCTCGCATGGGGAGACCCCACACTGCCAT‑GGAGGCACGGTCGTTTTTCTTCTGGGATCGGCATGGGGTGAGGTGGGGCAACcg > 2:413026/6‑149 (MQ=12) gcCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACcg < 1:189329/149‑1 (MQ=255) gcCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCAGCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCACGGGGTCGCGTGGAagcaccc > 2:774575/1‑148 (MQ=18) aTGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTGTCCGTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCt > 2:1017221/1‑149 (MQ=255) cAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCTTGGGATCAGGTGGGACCACCGCGCTACg < 1:1092609/149‑1 (MQ=255) aaaaaGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACgg > 1:1436414/1‑149 (MQ=255) aaaaaGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACgg > 1:1227357/1‑149 (MQ=255) aaaGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgcc > 1:1297403/1‑149 (MQ=255) aaaGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGgcc > 1:1060032/1‑149 (MQ=255) aaaGGCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTGCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCCCCGCGCACCGgcc > 1:801939/1‑149 (MQ=17) aGGCCATCCGTCAGGATGTCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGCGCTCCACATGTGGTCAGGTGGGACCACCGCGCTACGgccgc < 2:914930/149‑1 (MQ=17) gCCATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGGCAGGTGGGACCACCGCGCTACGGCCGCCa > 2:303444/1‑149 (MQ=255) ccATCCGTCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAg > 1:279565/1‑149 (MQ=255) cGTCAGCATGGGCCTTCGAATAATTCGATGCCGGGCAGATCCCTGGTCTCGCATGGGGTGGCCCCCCGCTACCAGCGGCGCTACTG‑CGGTTGACGTCTGAGTTCGGCATTGGGTCAGGTGGGACCACCGAGCTACGGCCGCCAGGCaaa < 2:833645/149‑1 (MQ=2) tCAGGATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCCGGCaaact > 2:1783623/1‑147 (MQ=255) ccttagCCTCTCGCTTAATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTg < 2:81274/144‑1 (MQ=255) gATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGt > 2:1040521/1‑149 (MQ=255) gATGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCCACGGCCGCCAGGCAAATTCTGt > 1:1653124/1‑149 (MQ=255) ttGGCCTTTCGCATCAGGCGCTGCCTGGCAGTCCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCCACGG‑CGTTTCACTTCTTAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGTCGCCAGGCAAATTCTGtt < 2:1270901/148‑1 (MQ=11) aTGGCCTTTCGCATAATTCGATGCCCGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGtt < 2:1737792/149‑1 (MQ=255) tGGCCTTTCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGttt < 1:694557/149‑1 (MQ=255) ccggttgCATAAGTCGATGCCTGGCAGTGCCCTACTCTCGCATGGGGAGTCCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAt < 2:792028/143‑1 (MQ=11) ccTTTCGCATAATTCGATGCCTGGCAGTCCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTAt < 1:26813/149‑1 (MQ=255) tttCGCATAATTTGATGCCTGCCAGTTCCCTACTCTCGCATGGGGAGCCCCCACACGACCATCGGCGCTACGG‑CGTTTCACTGCTGTGTTCGGCATGGGGGCATGTGGGACCACCGCGCGACGGCCGCTAGGCAAATTCTGTTTTATCa < 1:1364181/149‑1 (MQ=11) tttCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTGGGCATGGGGTCCGGTGGGACCACCGCGCTACGGCCGCCCGGCNAATTCCGTTTTCTCa > 1:1590651/1‑149 (MQ=11) tttCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCa < 1:797941/149‑1 (MQ=25) tttCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCa > 1:735286/1‑149 (MQ=25) tttCGCATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCa > 2:578250/1‑149 (MQ=25) cATAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCg > 1:1562031/1‑149 (MQ=14) aTAATTCGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTGCACTTCTGAGTTCGGCAGGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGc > 1:603922/1‑149 (MQ=2) | GTATGGAAGTGGGCAAGTTGGGGAAGCCGTATCCGTTGCTGAATCTGGCATATGTGGGAGTATAAGACGCGCAGCGTCGCATCAGGCATTTTTTTCTGCGCCAATGCAAAAAGGCCATCCGTCAGGATGGCCTTTCGCATAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGG‑CGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGC > CP009273/2719282‑2719568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |