| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 468,126 | Δ1 bp | coding (73/339 nt) | glnK → | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 468,126 | 0 | A | . | 98.1% | 462.4 / ‑1.0 | 103 | coding (73/339 nt) | glnK | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (44/57); minor base C (0/2); total (44/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 103 total aligned reads displayed.
TTTCTGGCACACCGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAA > CP009273/467982‑468269 | tttCTGGCACACCGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGACGCGTTATCTTCCAGTGGT‑TTCAg > 1:700313/1‑149 (MQ=255) ttCTGGCACACCGCTTGCAGTACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAgg < 1:1413007/149‑1 (MQ=255) gCACACCGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTGATCTTCCATTGGT‑TTCAGGGCCTg > 1:42590/1‑149 (MQ=255) cacaCCGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGa < 1:673354/149‑1 (MQ=255) acacCGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGAGCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGAc > 1:1824523/1‑149 (MQ=255) cacCGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGc < 2:1291498/143‑1 (MQ=255) cGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGAGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTg > 2:306698/1‑143 (MQ=255) gCTTGCAATACCTTCTTCGTGTGGCAGAGCCATTACCGAAGTCTGACCGGAGGGGATCTATGAGGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTGCATTGGT‑TTCAGGGCCTGACCGTCa < 1:963011/149‑1 (MQ=255) cTTGCAATACTTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCAc < 1:1516018/149‑1 (MQ=255) gCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGt < 2:1628158/143‑1 (MQ=255) gCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGt < 2:852660/143‑1 (MQ=255) cagtACCTTCTTCGTGTCGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCATGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGaa < 1:1373715/146‑1 (MQ=255) cAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGaa < 1:578981/149‑1 (MQ=255) cAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGaa < 1:834413/149‑1 (MQ=255) actgcctcgttcGTGTAGCAGAACCATTACCGAATGCTGACCGGAGGGGATCCACGAAGCTGGTGACCGTGATAATCACACCATTCATGCCGGAAG‑CCGTTCGCGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCa < 2:305524/134‑1 (MQ=255) aaTACCTTCTTCGTGTAGCAGAACCATTCCCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCa < 2:1074451/143‑1 (MQ=255) tACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCACGCTGGAAG‑ACGTGCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCAcc > 2:622460/1‑143 (MQ=255) cttcttCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGGCCGTGATAATCAAACAATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTGCCATTGGT‑TTCAGGGCCGGACCGTGACCGaa > 2:1720937/1‑143 (MQ=255) cttcttCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGaaa < 1:756562/149‑1 (MQ=255) cttcttCGTGTAGCAGAACCATCACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGaaa < 1:131995/149‑1 (MQ=255) ttcttcGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAg < 1:75195/149‑1 (MQ=255) ttcttcGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAg > 1:79789/1‑149 (MQ=255) tcGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATGATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGGAGCGTTATGTTCCCTTGGT‑TTCAGGGCCTGACCGTCTCCGAAGTGAAAGGttt > 1:425544/1‑149 (MQ=255) cgttgaGCACAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGaaa < 2:1470128/138‑1 (MQ=255) gtgtAGCAGAACCAGTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTGCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAg < 2:1158819/143‑1 (MQ=255) gttAGCAGAACCATTACCGAATTCTGACCGGAGGCGCTCCATGACGCTGCGGACCGTGATAATCAATCCCAGCCATCTGGAAGCACGTT‑GTGATACTTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCgg < 1:927298/147‑1 (MQ=255) gtAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCggg > 1:1141165/1‑149 (MQ=255) tAGCAGAACCATTACCGAATTCTCACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGtt > 2:1191801/1‑143 (MQ=255) gCAGATCCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGt < 1:845187/149‑1 (MQ=255) gCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGGTTCGGGCGt > 1:333434/1‑149 (MQ=255) aaCCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGa > 1:1435044/1‑149 (MQ=255) aaCCAGTACCGAATTCTGACCGGGGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGa < 1:240025/149‑1 (MQ=255) ccATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGt < 2:1730155/143‑1 (MQ=255) ccATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATGGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGt < 2:721078/143‑1 (MQ=255) ccATTACCGAATTCTGACCGGAGGGGATCTATGAAGCAGGTGACCGTGATAATCAAACCATTCATGCTGGAAG‑ACGTCCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGt < 2:1730145/143‑1 (MQ=255) ccATTACCCAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGt < 2:1758212/143‑1 (MQ=255) cATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAg > 1:1206942/1‑149 (MQ=255) cATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAg < 1:1642935/149‑1 (MQ=255) ttACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAggg < 1:1272526/149‑1 (MQ=255) tACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGc > 1:1776561/1‑149 (MQ=255) aCCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACAATTCAAGATGGAAT‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCAGCGAAGTGTAAGGTTTCGGTCGTCAGAAAGGGCa > 1:1167368/1‑149 (MQ=255) ccGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCGGAAAGGGCAt > 1:1551630/1‑149 (MQ=255) ccGAATGCTGACCGGAGGGGATCTATGAAGCTGGTAACCGTGATAATCAAACCATTCCAGCTGGAAG‑ACGTTCGTGAAGCGTTATCGTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCAt < 1:1601698/149‑1 (MQ=255) cGAATTCTGACCGGAGGGGCTATCGGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAg < 2:1687757/143‑1 (MQ=255) cGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAg > 2:671081/1‑143 (MQ=255) tCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAg < 1:1631598/149‑1 (MQ=255) cTGACCGGAGGGGATCTATGAACACGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATg < 2:1404269/143‑1 (MQ=255) cGGGGGGGATCTATGAAGCTGTGGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGGTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAg < 2:572767/143‑1 (MQ=255) gAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCt > 2:1603202/1‑143 (MQ=255) ggggTTCTATGAAGCTGGTGGCCGGGATAATCAAACCATTCTAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGGCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCggg < 1:737971/149‑1 (MQ=255) ggggATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCggg < 1:260607/149‑1 (MQ=255) gATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAGG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTAcc > 2:884918/1‑143 (MQ=255) gATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAGGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGGGCTGTACCgggggg > 1:597865/1‑149 (MQ=255) gATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTAcc > 2:1737991/1‑143 (MQ=255) gATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCgggggg > 1:913946/1‑149 (MQ=255) aTCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAGGTGAAAGGTTTCGGGCGTCAGAAAAGGCATGCCGAGCTGTACCGGGGGGc > 1:1042189/1‑149 (MQ=255) cTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCgg > 1:1756914/1‑149 (MQ=255) gttGAAGCTGGGTGCCGTGATAATCAATCCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCgggg < 2:1251159/141‑1 (MQ=255) aTGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGaa < 1:333310/149‑1 (MQ=255) gAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGc > 2:547334/1‑143 (MQ=255) aaGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATAc < 1:1098660/149‑1 (MQ=255) aGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTTACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGCGCCGAATACa < 1:468129/149‑1 (MQ=255) aGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACa > 1:1195863/1‑149 (MQ=255) cTGGTGACCGTTATAATCAAACCATCCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGGGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGaa < 2:1568226/143‑1 (MQ=255) cTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGaa > 2:1734579/1‑143 (MQ=255) tGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGACAGGTTTCGGGCGGCAGAAAGGGCATGCCGAGCTGTACAGGGGGGCGGacg > 2:614323/1‑141 (MQ=255) ggggACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATa < 2:306811/140‑1 (MQ=255) cGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGt > 2:371047/1‑143 (MQ=255) aaTCAAACCATTCAAGCTGGAAG‑ACGTTCGTAAAGCGTCATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGTGACGGAATACAGCGTCAAttg > 2:1687996/1‑142 (MQ=255) aaaCCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTg > 2:266323/1‑143 (MQ=255) aaaCCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCaaaa > 1:1325460/1‑149 (MQ=255) agcccatcagtcTGGACG‑ACGTTCGTGAAGCTCTATCTGCCATTGGT‑TTCAGGGCCGGACCGTCACCGCAGTGAAAGGTTGCGTGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTCCCTGc < 2:499780/132‑1 (MQ=255) aaCCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAg > 1:1490188/1‑149 (MQ=255) aaCCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAg > 1:1518004/1‑149 (MQ=255) ttCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGTATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTaaaa < 1:1687804/149‑1 (MQ=255) aaGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTa < 2:1040296/143‑1 (MQ=255) aGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTg < 1:1551999/149‑1 (MQ=255) aGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTg > 1:1687791/1‑149 (MQ=255) aGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTg < 1:1432861/149‑1 (MQ=255) cTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCCCCGCAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGCCAACTTCCTCCCAAAAGTaaaa > 2:50980/1‑143 (MQ=255) gAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCACAAGTAAAAAtt > 2:547260/1‑143 (MQ=255) aaG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTgg < 1:1499742/149‑1 (MQ=255) aaG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAAATg > 2:353227/1‑143 (MQ=255) aaG‑ACGTTCGTGAAGCGTTATCTTCCATTGG‑CTACAGGCCCGCACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTgg < 1:997099/149‑1 (MQ=255) aG‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGa > 2:913181/1‑143 (MQ=255) g‑ACGTTCGTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCg < 1:360063/149‑1 (MQ=255) ttCGTGAAGCGTTATCATCCATTGGT‑TTCAGGGCCTGGCCGTCACCGAGGTGAAAGGGTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTg > 1:1212871/1‑149 (MQ=255) tCGTGAAGCGTTATCTTCCATTGG‑CTTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGc < 1:514647/149‑1 (MQ=255) gTGAAGCGTTATCTTCCATTGGT‑TTCAGGGCCGGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGa < 2:1317861/143‑1 (MQ=255) aaGCGTTATCCTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtgatg < 1:1484650/149‑1 (MQ=255) aGCGTTATCTTCCATTGGT‑TTCAGGGCCGGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGc < 2:38381/143‑1 (MQ=255) aGCGGTCTCTTCCCTTGGT‑TCCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGc < 2:824338/143‑1 (MQ=255) cGTTCTCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGCGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtg < 2:1112/143‑1 (MQ=255) cGTTATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAACTGATGTGGCGATTGCTGATGAcc < 1:1007877/149‑1 (MQ=255) ttATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtgat < 2:1103071/143‑1 (MQ=255) ttATCTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCtgat > 2:752950/1‑143 (MQ=255) cTTCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCg < 1:332057/149‑1 (MQ=255) ttCCCTTGGT‑TGCAGGCGCTGCCCGTCCGCGAAGGTAAAGGTTTTGGGCGTCAGAAAGGGTATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGa < 1:1817338/149‑1 (MQ=255) ttCCATTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGa > 1:1794990/1‑149 (MQ=255) aTTGGT‑TTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGaa > 1:413390/1‑149 (MQ=255) | TTTCTGGCACACCGCTTGCAATACCTTCTTCGTGTAGCAGAACCATTACCGAATTCTGACCGGAGGGGATCTATGAAGCTGGTGACCGTGATAATCAAACCATTCAAGCTGGAAG‑ACGTTCGTGAAGCGTTATCTTCCATTGGTATTCAGGGCCTGACCGTCACCGAAGTGAAAGGTTTCGGGCGTCAGAAAGGGCATGCCGAGCTGTACCGGGGGGCGGAATACAGCGTCAATTTCCTGCCAAAAGTAAAAATTGATGTGGCGATTGCTGATGACCAACTCGATGAA > CP009273/467982‑468269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |