| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 1,882,644 | (T)6→5 | coding (1360/1686 nt) | fadD ← | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,882,639 | 0 | T | . | 96.9% | 414.9 / 6.2 | 97 | coding (1365/1686 nt) | fadD | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| Reads supporting (aligned to +/- strand): ref base T (1/2); new base . (44/50); total (45/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.26e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
CTTTTTTCACTACGAAGATTTTCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGAC > CP009273/1882491‑1882779 | cTTTTTTCACTACGAAGATTTTCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTGGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCt > 1:1471641/1‑149 (MQ=255) ttCACTACGGAGATTTTCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCttttta < 1:1089502/149‑2 (MQ=255) cACTACGAAGATTTTCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATTTCtt > 2:832571/1‑143 (MQ=255) accaCGAAGATTTTCACCGCTTCACCCCTGG‑AGCCGGAAGGTACGCCAACTGCCGCCACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCTGAAACCAGAATCATGTCttt < 2:235195/140‑1 (MQ=255) gAAGATTTTCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCtttttacg < 2:1122648/143‑4 (MQ=255) aaGATTTTCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACa > 1:761091/1‑149 (MQ=255) agagTTTCCCCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGAt < 2:708827/143‑1 (MQ=255) gATTTTCCCCGCTTCCCCACCGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAAt < 1:2853/149‑1 (MQ=255) tttCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATgcg > 1:103491/1‑149 (MQ=255) ctcacGCCTCCCCACCGGAAGCCGGAATGTTCGCTAGCAGCCTCGACTTCCTGTACGCCAGGATGCTGCATTACGACATCTTCAATCTCGTTGGGATAGCCGTTAAAACCGGACACCAGAATCATGTC‑TTTTTACGATCGACa < 2:1206033/139‑1 (MQ=255) cACCGCTTCACCACTGG‑GGCCGGAAGGTACGCCAACAGGCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAAt < 2:1078364/143‑1 (MQ=255) cACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGACTCATGTC‑TGTTTACGATCGACAATGCGCAg < 1:1002028/149‑1 (MQ=255) cACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAg < 1:1795430/149‑1 (MQ=255) ccGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGGAACCAGAATCATGTC‑TTTTTACGATCGACAATgc > 2:1500728/1‑143 (MQ=255) cGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATgcg < 2:1512191/143‑1 (MQ=255) caccacTGG‑AGCCGGAAGGTACGCCAACCGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCctt < 1:1021703/149‑1 (MQ=255) caccacTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCctt < 1:1283399/149‑1 (MQ=255) caccacTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCctt < 1:800994/149‑1 (MQ=255) ccacTGG‑AGTCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCACGACGACATCTTCAATCCCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCcttct < 1:403658/149‑1 (MQ=255) ccacTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAAt > 2:228022/1‑143 (MQ=255) cacTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCcttctt < 1:942341/149‑1 (MQ=255) g‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCcttct > 2:387243/1‑143 (MQ=255) gCCGGAAGGTACGCAAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCttcttc < 2:251094/143‑1 (MQ=255) ccGGCAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCa < 2:74331/143‑1 (MQ=255) ccGGAAGGTACGCCAACAGGCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCAtt > 1:1385987/1‑149 (MQ=255) cGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTa > 1:327646/1‑149 (MQ=255) gAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCATTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTAcc > 1:290378/1‑149 (MQ=255) aaGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTT‑CGATCGACAATGCGCAGGAATCCTTCTTCATCCAttcctg > 1:647441/1‑145 (MQ=255) aGGTCCGCCAACACCCGCGACCTCCTGTACGCCAGGATGCTGCATGACGACCTCTTCAACCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACcgc < 1:14265/149‑1 (MQ=255) tACGCCCACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGCTGCTCCTTAAAGCCGGTAACCATAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGAt < 1:1398174/149‑1 (MQ=255) tACGCCAACAGCCGCGACTTCCTGTACGCCATGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAGTCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGAt < 1:1278671/149‑1 (MQ=255) gCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAACCCAGAATCATGTC‑TTTTTACGAGCGACAATGCTCAGTAAGCCTTCTTCATCCATTACcgc < 2:844010/143‑1 (MQ=255) gCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACcgc < 2:1180668/143‑1 (MQ=255) caccAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGc < 1:1899668/146‑1 (MQ=255) aaCAGCCGCGACTTCCTGGACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGcc < 1:216331/149‑1 (MQ=255) cAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCgg < 1:511661/149‑1 (MQ=255) cAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCACAGGAATCCTTCTTCATCCATTACCCCGATGTCGCCgg > 1:757661/1‑149 (MQ=255) agtcgcgATCTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGgt < 1:748998/146‑1 (MQ=255) gccgccACTGCCTGTACGCCAGGTGGCTGCCTGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGCATCCAGACTCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCg < 2:1354607/143‑1 (MQ=255) gCCGCGACTTCCTGGACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGgtg < 1:230132/149‑1 (MQ=255) ccGCGACTTCCTGTACGCCGGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGgtgt > 1:1385909/1‑149 (MQ=255) ccGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGgtgg > 1:538067/1‑148 (MQ=255) cgcgACTTCCTGTAAGCCAGGATGCTGCCTGACTTCGTCGGCAATCTCGATGGGATAGACGTTAAAACCGGAAACGAGAATCATGTC‑TTTTTACGATCGACGATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGgtgtg > 1:1408113/1‑149 (MQ=255) cTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACATTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGgtgt < 2:135952/143‑1 (MQ=255) ttCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGCCAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCa > 1:659133/1‑149 (MQ=255) ccTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGc > 1:1327830/1‑149 (MQ=255) tGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCa > 1:879806/1‑149 (MQ=255) gTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAGCCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTGCTTCATCCATTACCGCGATGTCGCCGGTGTGTAAcc < 2:1700453/143‑1 (MQ=255) tACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCa < 2:106825/143‑1 (MQ=255) cAGGATGCTGCATGACGACTCCCTCCATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTtga < 1:249434/149‑1 (MQ=255) cAGGATGCTCCATGACGACACCTTCAATCTCGTTGGGATAGAACTTAACGAAAATGACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTtga < 1:535260/149‑1 (MQ=255) aGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTtgat < 1:210229/149‑1 (MQ=255) gATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTACCCAGCCATTTTtgatga > 1:245768/1‑149 (MQ=255) tgcATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGACACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAGTCCTTCTTCATCCATTGCCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCa > 1:41546/1‑149 (MQ=255) cATGACGACATCTTCAATCTCGTTGGGATATACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATc > 1:999841/1‑149 (MQ=255) cATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCAtttttactgaa > 2:1243381/1‑137 (MQ=255) cATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATc > 1:1711513/1‑149 (MQ=255) aTGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGAtt > 2:194886/1‑143 (MQ=255) tGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACAAGCCATTTTTGATGAttt > 2:323964/1‑143 (MQ=255) gacATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGAGCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGCTGTCGCCGGTGTGTAACCGGCCCTTTGTACTGATTTCATc > 2:1415411/1‑143 (MQ=255) acATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCg < 2:1605617/143‑1 (MQ=255) cATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCAt > 1:1889084/1‑149 (MQ=255) tctcCAATCTCGTTGGGATAGACGGTAACACCGAAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAACCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCg < 1:524780/149‑1 (MQ=255) tCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTa > 2:135056/1‑143 (MQ=255) cTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCgg > 1:1088345/1‑149 (MQ=255) ttCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCACTTTTGATGATTTCATCGGTCGCATCcgg > 1:1641228/1‑149 (MQ=255) cAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCAt > 2:1171694/1‑143 (MQ=255) cAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCAt > 2:1367794/1‑143 (MQ=255) aTCTCGTTGGGATAGCCGTTAAAACCGGAAACCAGACTCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCg < 2:1357348/143‑1 (MQ=255) aTCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGc < 1:1735293/149‑1 (MQ=255) aTCTCGTTGGGATAGAAGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCg > 2:1070779/1‑143 (MQ=255) aTCTCGTTGGCACAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGc < 1:1192757/149‑1 (MQ=255) tctcGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCgg < 2:1735766/143‑1 (MQ=255) cGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGcc > 1:1234681/1‑149 (MQ=255) gTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGCACGCTGccg > 1:1638480/1‑148 (MQ=255) ttGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGGCGCTGCCAg > 1:719781/1‑149 (MQ=255) ttGGGATAGACGTTAAAACCGGAAACCAGAAGCATGTC‑TTTTTACGCTCGCCGATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAg < 1:1674267/149‑1 (MQ=255) tGGGATAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCt > 2:1461205/1‑143 (MQ=255) ggAGAGACGTTAAAACCGAAACCCAGGATCAGGGC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAGCCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGc < 2:424423/143‑1 (MQ=255) caaTAGACGATAAAACCGGAAACCAGAACCATGTC‑TTTCTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCCATGTCGCCGGTGTGTAACCAGCCATCTTTGATGATTTCATCGGTAGCATCGGGACGCTGc < 2:546091/141‑1 (MQ=255) aTAGACGTTAAAACCGGAAACCGGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCa < 2:1565119/143‑1 (MQ=255) tAGACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAAccc < 1:1616908/149‑1 (MQ=255) gACGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAg < 1:1846895/149‑1 (MQ=255) aCGTTAAAACCGGAAACCAGAATCCTGTC‑TTTTGACGATCAACAATGCGCAGGAATCCTGCTTCAGCCATTACCGCGCTGTCGCCGGTGTGTAACCAGCCATTTTTGCTTATTTCATCGGCCGCGTGGGGACGCTgacctgaaccccgg > 1:396122/1‑136 (MQ=255) aCGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGc < 1:1622212/149‑1 (MQ=255) aCGTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGc > 1:1474504/1‑149 (MQ=255) cGTCAAAACCGGAAACCCGAACCAGGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCa < 1:278681/149‑1 (MQ=255) gTTAAAACCGGAAACCAGAATCATGTC‑TTTTTACGATCGACACTGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGCGTGTTAACATCCTTCCTGGCTTATTTCATCGGTAGCATCGGGACGCTGCCAGTACCCCAGCAt > 1:364818/1‑149 (MQ=255) tcaaaaCCGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGGGTTGAACCAGCCATTTTTGATGATTTCAGCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATc > 1:1130228/3‑149 (MQ=255) aaCCGGAAACCAAAATCCTGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCa < 2:799947/143‑1 (MQ=255) ccGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGCTTTCCTCCGGGGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGc > 1:356739/1‑149 (MQ=255) cGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCg > 1:1713585/1‑149 (MQ=255) cGGAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCg < 1:404154/149‑1 (MQ=255) ggAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTATATTCTTGCTGCGGGACGCTGCCAGTAACCCAGCATCAc < 2:802657/143‑1 (MQ=255) ggAAACCAGAATCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGCTGTGCAACCCGCCATTTGTGAGGATGCCAGCGGTGGCATCGGGACGCTGCCAGTAACCCAGCATCAc > 2:190537/1‑143 (MQ=255) ccccaactaTCACGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCCGTAGCATCGGGACGCTGCTCGTAACCCAGCATCACCt > 2:1160904/9‑143 (MQ=255) gacgaTCATGACTTC‑TTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGGCGCCGGTGTGTAGCCAGCCACTTTTAATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCTGTCCttt < 1:1462520/145‑1 (MQ=255) cAGAATCATGTC‑TTTTTACGATCGACAAGGCGCAGGAATCCTTCTTCATCCCTTACCGCGCGGGCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCttt < 1:920489/149‑1 (MQ=255) gAATCATGTCTTTTTT‑CGATCGACTATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGa < 1:69433/149‑1 (MQ=255) aaTCATGTC‑TTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGac > 1:966497/1‑149 (MQ=255) | CTTTTTTCACTACGAAGATTTTCACCGCTTCACCACTGG‑AGCCGGAAGGTACGCCAACAGCCGCGACTTCCTGTACGCCAGGATGCTGCATGACGACATCTTCAATCTCGTTGGGATAGACGTTAAAACCGGAAACCAGAATCATGTCTTTTTTACGATCGACAATGCGCAGGAATCCTTCTTCATCCATTACCGCGATGTCGCCGGTGTGTAACCAGCCATTTTTGATGATTTCATCGGTAGCATCGGGACGCTGCCAGTAACCCAGCATCACCTGCGGTCCTTTGAC > CP009273/1882491‑1882779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |