New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 313714	1 (0.020)	49 (0.840)	42/296	0.4	98.0%	coding (317/594 nt)	rclC	reactive chlorine species (RCS) stress resistance inner membrane protein
	?	CP009273	376716 =	NA (NA)					intergenic (‑1/‑91)	yaiX/insC1	pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA

CCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  CP009273/376569‑376859                                                                                                                                                     |                                                                                                                                                ccTGGTTTGCAAATACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTa                                                                                                                                                <  1:446139/149‑1 (MQ=255)   tGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCTGTTCTGATTATTGTGCCAGGACGAAGAAACGCATAATTGCTAGa                                                                                                                                              >  1:547398/1‑149 (MQ=255)   tGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGa                                                                                                                                              >  1:317295/1‑149 (MQ=255)   tGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ACTTTCAATTATTGGCGGAGTTTTGTGCCAGGGCGAATAAACGCATAATTACTGGa                                                                                                                                              >  1:453127/1‑149 (MQ=255)   tGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCGCGGTGGCAAAACAAGCTTTTGAAAGGACTTGT‑AGTATTGTGCGAGGACGGAGAAACGCATAATTACTAGa                                                                                                                                              >  1:453087/1‑149 (MQ=255)      gttGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCGTCAATCACCGCATTTTTAATCTCTGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTg                                                                                                                                           <  1:445103/148‑1 (MQ=255)         gCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGcc                                                                                                                                        <  1:368536/149‑1 (MQ=255)            aCTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGccccc                                                                                                                                     <  1:63194/149‑1 (MQ=255)                ccGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAACACCA‑CCTTTAACACAATCACTGATAATTGTGCCATGTCAAATAAACTCATAACTACTAGACCGGCCCCCCGaa                                                                                                                                 >  2:83667/1‑149 (MQ=255)                   aGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTCCTAGACTGGCCCCCTGAAtct                                                                                                                              >  2:845968/1‑149 (MQ=255)                     tCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTcc                                                                                                                            <  1:538691/149‑1 (MQ=255)                       ggCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAACCCA‑ATTTTTACGCCATTACTGATTATTGTGCACGGACGAATAAACGCATCATTACTAGACTGGCCCCCTGAAtcacaac                                                                                                                          >  2:12444/1‑144 (MQ=255)                       ggCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAg                                                                                                                          >  2:414499/1‑149 (MQ=255)                        gCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGa                                                                                                                         >  1:772383/1‑149 (MQ=255)                          aaTAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTTATCTGGGGGGCGAAACCA‑ATGTTTACGCCATTGCTGGTTATTTTGCCAGGACGAATAAACGCATAATTGATAGACTGGCCCCCTggagcctccagca                                                                                                                       >  2:628123/1‑137 (MQ=255)                            tAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAc                                                                                                                     >  1:866380/1‑149 (MQ=255)                             aaaaCATTGCGGACCACTCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAcc                                                                                                                    <  1:146416/149‑1 (MQ=255)                               aaccttccgtgtcAATCGTTCCCTCCGCTGCAGTAACCGCATTTTTAAGCGCGGGGGCAAAACCA‑CTTTTTACGCCATTGCTGATTATGGTGCCACGACGAATAAACGCATAATTACTACACTGGCCCCCTGAATCTCCAGACAAccca                                                                                                                  <  2:523942/137‑3 (MQ=255)                                aCATTGCGGACCAATCGTTGCTTCAGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAat                                                                                                                 >  1:710750/1‑149 (MQ=255)                                   ttGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCGATATc                                                                                                              >  1:358850/1‑149 (MQ=255)                                      cGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACt                                                                                                           >  1:777889/1‑149 (MQ=255)                                                      tCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATAACACTTAAATAAGTGATGGTc                                                                                           >  1:562593/1‑149 (MQ=255)                                                       ccGCTTCAATAACCGCATTTTTAATCTCGGTGGTCAAAGCA‑ATTTTTAAGCAATTGCTGATTATTGTGCCAGGACGAATAAACGCAAAATTAATAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAATGAAAGTCt                                                                                          >  2:364990/1‑149 (MQ=37)                                                        cGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGGGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt                                                                                         <  1:358367/149‑1 (MQ=255)                                                          cTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTGTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa                                                                                       <  2:846796/149‑1 (MQ=255)                                                            gcAATAACCGTATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATGGTGCCAGGACGAATAAATGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCGATGTCACTTAAATAAGTGATAGTCTTAATa                                                                                     <  1:467249/148‑1 (MQ=37)                                                               aTAACCGTATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa                                                                                  <  2:453087/149‑1 (MQ=255)                                                               aTAACCGCTTTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa                                                                                  <  2:453127/149‑1 (MQ=255)                                                               aTAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTCTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTACACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa                                                                                  <  1:506203/149‑1 (MQ=255)                                                                    atcATTCTTAATCTGGGTAGCAAAACCA‑ATTTTTACGCCATTGCTGACTACTCTGCCAGGTCGAATAAACCCATAATTACTAGACTGGCCCCCTGAATATTCAGAAAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGtttt                                                                             <  2:251569/147‑1 (MQ=21)                                                                     gCATTTTTAATCTCGGTGGCAAAACCA‑ATGTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGttttt                                                                            >  1:908082/1‑149 (MQ=255)                                                                     acATTTTTAATCTCGGTGGACAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAACCTCCAGACAACCAATATCACCTACATAAGTGATAGTCTTAATACTAGttttt                                                                            <  2:444326/148‑1 (MQ=37)                                                                      cATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTa                                                                           <  2:728669/149‑1 (MQ=255)                                                                        tttttAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATAGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGACTTAATACTAAttattaca                                                                         >  2:43861/1‑147 (MQ=255)                                                                          tttAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACt                                                                       <  1:894153/149‑1 (MQ=255)                                                                           ttAATCCCGGTGGGAAAACCA‑ATGTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCTCGCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTa                                                                      <  2:467981/149‑1 (MQ=25)                                                                             aaTCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGCTTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGt                                                                    <  1:414499/149‑1 (MQ=255)                                                                                       gcatacccA‑ATTTTTACGCCATTGCTGATTATTGTTCCAGGACGAATAAACGCATAATTGCTAGACTGGCCCCCTGAATCCCCAGACAACCAATATCACGTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa                                                          <  2:335868/143‑1 (MQ=21)                                                                                       gCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa                                                          <  2:761722/149‑1 (MQ=255)                                                                                       gCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGaa                                                          >  1:113096/1‑149 (MQ=255)                                                                                        cAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTAATTGGAGAAc                                                         >  2:710329/1‑149 (MQ=255)                                                                                         aaaaCCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTCATACTAGTTTTTGGACTAGTCATTTgagaccc                                                        >  1:171500/1‑146 (MQ=255)                                                                                                      tACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAGTAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGt                                            >  2:476593/1‑149 (MQ=255)                                                                                                        cGCCATTGCTGATTATTGTGCCGGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCt                                          <  1:949817/149‑1 (MQ=255)                                                                                                         gCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCtt                                         >  1:831893/1‑149 (MQ=255)                                                                                                          ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGCTTGATGTCTTa                                        <  2:777507/149‑1 (MQ=255)                                                                                                          ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTa                                        <  1:483657/149‑1 (MQ=255)                                                                                                          ccATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATGGATGTCTTa                                        >  1:953664/1‑149 (MQ=255)                                                                                                          ccATTGCTGATGATTGCGCCAAGACAAAGACACGCATAACTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGCTTGATGTCTTa                                        <  2:777540/149‑1 (MQ=14)                                                                                                              tGCTGATTATTGTGCTAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGGATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAGACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGc                                    <  2:214601/149‑1 (MQ=255)                                                                                                              tGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGc                                    >  2:741167/1‑149 (MQ=255)                                                                                                                atGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCg                                  <  1:914883/148‑1 (MQ=255)                                                                                                                   attattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGgag                               >  2:884814/1‑149 (MQ=255)                                                                                                                        tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGAGGATTGATGTCTTAGGGCCGGAGAAACg                          >  1:32249/1‑149 (MQ=255)                                                                                                                          tgCCAGGACGAATAAACGCATAATTACTGGACTGGCCCCCTGACTCTGCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACCAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCa                        <  2:334242/149‑1 (MQ=255)                                                                                                                            ccAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGGAACGCAGa                      >  1:378604/1‑149 (MQ=255)                                                                                                                             cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGAc                     >  1:936583/1‑149 (MQ=255)                                                                                                                                   gAATAAACGCATATTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATTCTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCTGACGGCGTa               <  2:416244/149‑1 (MQ=255)                                                                                                                                    aaTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTAc              >  1:179943/1‑149 (MQ=255)                                                                                                                                          cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGGGAAACGCAGACGGCGTACcacaca        >  1:626805/1‑149 (MQ=37)                                                                                                                                          cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACcacaca        <  2:908082/149‑1 (MQ=37)                                                                                                                                           gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAg       >  1:215228/1‑149 (MQ=35)                                                                                                                                                aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGaaaa  <  2:866380/149‑1 (MQ=32)                                                                                                                                                     |                                                                                                                                                CCTGGTTTGCAACTACCGAGTCGGCAATAAAACATTGCGGACCAATCGTTGCTTCCGCTTCAATAACCGCATTTTTAATCTCGGTGGCAAAACCA‑ATTTTTACGCCATTGCTGATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAA  >  CP009273/376569‑376859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.