New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2722802 =	33 (0.700)	6 (0.140)	5/276	4.8	17.2%	noncoding (2/76 nt)	gltW	tRNA‑Glu
	?	CP009273	= 4158259	27 (0.610)					intergenic (+131/‑41)	rrsB/gltT	16S ribosomal RNA of rrnB operon/tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTC  >  CP009273/4158117‑4158336                                                                                                                                                |                                                                              aTCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAACAGCAAGGCGTTTACGCGTTGGGAGTGAGGATGAAGAGAATAAGGCCGTTCGCTTTCTATTAGTGAAAGCTCAACCTACACGa                                                                         >  1:193542/1‑149 (MQ=255) aTCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGa                                                                         >  1:104544/1‑149 (MQ=40)        ccttaccgtaAAGAAGCGTACTTTGTAGGTCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCGGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATc                                                                  <  1:492105/149‑1 (MQ=255)         cttatctttATGATGTGTACTTTGTAGTGCTCACACAGA‑TTGTCTGATAGCATGTGACAGCCAATGCTTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCa                                                                 <  2:180105/149‑1 (MQ=14)          ttaccttaAAGAAGCGTACTTTGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAattgctt                                                                >  2:366462/1‑144 (MQ=255)               ttaAAGACGCGTACTTTGTAGTGCTGACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAATAGAATAAGGCCGTTCGCTTTCTATTAATGAAGGCTCACCCTACACGAAAATATCACGCAAc                                                           <  2:474657/149‑1 (MQ=255)                 aaaGAAGCGTACTTTGTAGTGCTCACA‑AGACGTTTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCACcgc                                                         >  1:168813/1‑149 (MQ=14)                     aagCGTACTTGGTAGTGCGCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGa                                                     <  1:53840/149‑1 (MQ=255)                       gCGTACTTTGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATa                                                   >  1:218098/1‑149 (MQ=255)                             tttGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCACGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCATTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAt                                             >  1:511250/1‑149 (MQ=255)                              tggtaggggtttcacaGG‑TTGTCGGATAGAAAGTGAAGAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAATGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAtt                                            <  1:560724/137‑1 (MQ=11)                               tGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAAttt                                           >  1:539531/1‑149 (MQ=255)                                 tAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTc                                         >  1:406508/1‑149 (MQ=40)                                 tAGTGCCCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACTCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTc                                         <  1:54551/149‑1 (MQ=255)                                   gTGCTCACACAGA‑TTGTCTGATAGAAAGTGGAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                       <  1:686169/149‑1 (MQ=37)                                   gTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                       <  2:104544/149‑1 (MQ=38)                                   gTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCgt                                       <  1:24699/149‑1 (MQ=38)                                      cTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCATCGCGTGATAAGCAATTTTCGTGTc                                    <  2:576366/149‑1 (MQ=255)                                      cTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTGGGGAGTGAGACTGAAGAGAATAAAGCCGTTAGCTTTCTATTAATGAAAGCCGAACCTGACCGAAAATATCGCGACACTCGGTACAACCAATTTTCTTGTc                                    >  1:27122/1‑149 (MQ=11)                                              gA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGt                            <  2:491185/149‑1 (MQ=37)                                                    tCTTATAGAAAGTGAAAAGCAAGGCGTTTACGAGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTaga                       <  2:299549/149‑1 (MQ=25)                                                    tCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGAGTCCCATTCGTCTaga                       >  1:367246/1‑149 (MQ=255)                                                        aTAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATAACACGCAACGCGTGAAAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGcc                   >  2:235075/1‑149 (MQ=25)                                                         tAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGccc                  >  1:338593/1‑149 (MQ=35)                                                           gAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAg                <  2:539531/149‑1 (MQ=33)                                                              cgTGAAAAGCAAGGCGTTTACGCGCTGGGAGTGCGGCTGGAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAGGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCAAAGac             >  2:226549/2‑149 (MQ=11)                                                               gTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGaca            <  2:33473/149‑1 (MQ=32)                                                                   aaaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGc        >  2:86244/1‑149 (MQ=31)                                                                    aaGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGcc       >  1:710879/1‑149 (MQ=11)                                                                         agtcggttACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAGGCTCACCCTACACGAAAATATCACGCAACTCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTc  <  1:19856/143‑1 (MQ=0)                                                                                                                                                |                                                                              ATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGA‑TTGTCTGATAGAAAGTGAAAAGCAAGGCGTTTACGCGTTGGGAGTGAGGCTGAAGAGAATAAGGCCGTTCGCTTTCTATTAATGAAAGCTCACCCTACACGAAAATATCACGCAACGCGTGATAAGCAATTTTCGTGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTC  >  CP009273/4158117‑4158336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.