| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 3,378,108 | +C | coding (47/471 nt) | argR → | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,378,107 | 1 | . | C | 98.9% | 284.9 / ‑5.0 | 88 | A16P (GCA→CCA) | argR | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (0/1); major base C (47/39); minor base A (1/0); total (48/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01 | |||||||||||
TCTTTCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAG‑CATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCAAAAT > CP009273/3377960‑3378249 | tctTTCATAACACTATTTCACCCTTTTTCAGGCCTGACTGTTTGCATAAAAATTAATCTGTATGTACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGttaaagcattta‑aag‑c < 1:574669/149‑1 (MQ=255) tttCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATGTCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGtgaaagcattta‑aag‑cca > 1:15652/1‑147 (MQ=255) tttCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGttaaagcattta‑aag‑cc > 2:55034/1‑147 (MQ=255) tCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAGAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTGTttaaagcattta‑agg‑ccgtt > 1:1193718/1‑145 (MQ=255) aTAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGttaaagcattta‑aag‑ccatta < 2:526126/148‑6 (MQ=255) aaCATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACtt > 1:190164/1‑149 (MQ=255) cATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGATGTATCAACCACCATATGGGGTGACTTATGCGAAGCGCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTa > 2:198835/1‑148 (MQ=255) attacctCAGCCTTCTCCAGGGCTGACTGTTTGCAAAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTaaa < 1:1308280/143‑1 (MQ=255) attTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATCCATCTGTATGCACAATAATGTTGTATAGTGCACCATATCGGGTCCAATATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAaagaa < 1:664326/149‑1 (MQ=255) ttCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAagaaga < 1:760714/149‑1 (MQ=255) ttCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCCAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAaagaag > 2:78292/1‑148 (MQ=255) tacagctgtcttcCGGGTGGACTCTTTTCATAAAAATCCATCTGTATCCACAATAATGTTTTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAATCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAagaaga < 1:292431/141‑1 (MQ=255) ccTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCAACATATCGGGTGACTTATGCGAAGCTCGGCTAAGAAAGAAGAACTAGATAAAGCATTTC‑AAGCCATTACGTAAAGAGGGGaaa > 2:62425/1‑148 (MQ=255) cttcAGGGCTGACTGTTTGCATAAAAATTCATCTTTATGCACAATAATGTTGTATCACCCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAATAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAg < 1:941200/149‑1 (MQ=255) cgtcAGGGCGGACTGTGTGCATAAAAATTCATCTGTATGCAGAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCCAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTa < 2:804767/146‑1 (MQ=255) ttcAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTCCCAGGATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGc > 1:1269573/1‑149 (MQ=255) ttcAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACAATACCGGGTGCCTTATGCGAAGCTCGGCTAAGCAAGAAGCACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAg > 2:813064/1‑148 (MQ=255) tGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAgg > 2:169850/1‑148 (MQ=255) tGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATCTCACCCCCAggg > 1:1048178/1‑149 (MQ=255) ggttGCATAAAAATTCATCTGTATTCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGaaa < 1:170510/147‑1 (MQ=255) ttGCCTAAAAATTCCTCTGTATGCACAATAATGTTGTATCACCCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAAtc < 1:481507/149‑1 (MQ=255) ttGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGACGAGAAATTTAGCTCCCAGGGCGAAAtc > 1:445653/1‑149 (MQ=255) ttGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATCTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAAtc < 1:882559/149‑1 (MQ=255) cATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAAtcgtc > 1:427717/1‑149 (MQ=255) cATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAAtcgtc > 1:428252/1‑149 (MQ=255) tAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTcgc < 1:61396/149‑1 (MQ=255) tAAAAATTCATCTGTATACACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGAGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCACTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAAtcgtcg > 2:923022/1‑148 (MQ=255) aagcaagtgaTCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTcgc < 1:850121/140‑1 (MQ=255) aaaaaTTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGGAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAAtcgtccc > 2:428818/1‑146 (MQ=255) aaaaaTTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGCAATCGTcgcc > 1:628524/1‑149 (MQ=255) aaaaTTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTcgcc > 2:189888/1‑148 (MQ=255) aaaTACATCTGTATGCACAATAACGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTcgccgc < 1:784761/149‑1 (MQ=255) ttCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGt < 2:314702/148‑1 (MQ=255) ctccgtctGCACAATAATGTTGTATCAACCCCCATACCGGGCCACTTATCCGAAGCTCGGCTCAGTCTGTAGGACCAATTAAAGTAAGGAGAGG‑TAGTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCa < 1:665004/142‑1 (MQ=255) aTCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGGTGATCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCa < 1:995454/149‑1 (MQ=255) aTCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGc > 2:1251450/1‑148 (MQ=255) aTCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGc < 2:514470/148‑1 (MQ=255) tCTGTATGCACAATAATGTTGTATCAACCGCCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAATAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTGGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAg > 1:831631/1‑149 (MQ=255) tCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAg > 1:380004/1‑149 (MQ=255) cggTATGCATGATAATGTTGTATCACCCACCATATCGGTTGACTTATGCGAAGCTCAGCTAAGCAATAAGAACTATTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAgg < 1:642732/147‑1 (MQ=255) cTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCATCGCCGCGTGGCAg > 2:641948/1‑148 (MQ=255) gTATGCACAATAATGTTGTATCAACCACCATATCGGGTGGCTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAg > 1:485149/1‑149 (MQ=255) aTGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGCAAATTAGCTCACAGGGTGACATCGGCGCCAGGTTGCAGGatc > 2:857463/1‑146 (MQ=255) gCACAATAATGTTGTATCCACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAg < 1:365012/149‑1 (MQ=255) gCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAg > 1:1130544/1‑149 (MQ=255) cacaATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAg > 2:1029659/1‑148 (MQ=255) acaATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAgg > 2:533900/1‑148 (MQ=255) acaATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCACGGCTGAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAGGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTGGCAGGAGCAAGGc > 1:752027/1‑149 (MQ=255) aataatGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCtt > 1:1288166/1‑149 (MQ=255) aataatGTTGTATCAACCACCATATCGGGTAACTTATGCGAAGCTCGCCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCtt < 1:1269763/149‑1 (MQ=255) aagaatGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCt < 2:106265/145‑1 (MQ=255) taatGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAACGAAGAGTATTTTAGCTCCCAGGGGGAAATCGTCGCCGCGTTGCAGGAGCCAGGCttt < 2:982796/148‑1 (MQ=255) ttgtATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGCAGAACTAGATAAAGCATTTA‑CAGCCATTACATAAAGAACAGAAATTTAGCTCCCATGTCGAAATCTTCGCCGCGTTGCAGGAGCAAGGCTTTGACaa > 2:419183/1‑148 (MQ=255) tATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTTATAAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATAtt > 1:608527/1‑149 (MQ=255) tATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATGTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAatat < 2:411438/148‑1 (MQ=255) aTCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTATCTCGCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATCTTa > 1:318626/1‑149 (MQ=255) tCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTaa > 1:1295186/1‑149 (MQ=255) cccacctTAGCGGGTGACTTATGCGAAGCTCGACTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCa < 1:128984/148‑1 (MQ=255) ccaccaTATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCa > 2:579825/1‑148 (MQ=255) accaTATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATAGTCGAAGTATTTCAGGAGCAAGGCTTTGACAATATTAATCAGTc < 1:1007267/149‑1 (MQ=255) atCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTaaa > 2:735125/1‑148 (MQ=255) tCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGGCTAAAGt > 1:141283/1‑149 (MQ=255) ggTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAACTCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGtct < 2:307057/148‑1 (MQ=255) tGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTcg < 2:564738/148‑1 (MQ=255) ttATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGa > 2:781283/1‑148 (MQ=255) ttATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGa < 2:890182/148‑1 (MQ=255) aTGCGAAGCCCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATg < 2:517267/148‑1 (MQ=255) tGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGtt > 1:1326821/1‑149 (MQ=255) tGCGAAGCTCGGCTAAGCAAGAAGAACTAGGTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGt > 2:1012282/1‑148 (MQ=255) gCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTGGCGGagggt > 2:770551/1‑144 (MQ=255) gCGAAGCTCGGCGAAGCAAGAAGAACTAGCTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGtt < 2:729974/148‑1 (MQ=255) gCGAAGCTCGGATAAGCAAGAAGAACTAGTTAACGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTg < 1:217383/149‑1 (MQ=255) cGAAGCACGGCTAAGCAACAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGa < 1:1126507/149‑1 (MQ=255) gAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGTAGCAAGGCTTTGACAATATTAATCAGTCTGAAGTCTCGCGGATGTTgcc > 1:451676/1‑147 (MQ=255) gAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATAGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGa > 2:933649/1‑148 (MQ=255) tCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTAGCCGCGTTGCAGTAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAg > 2:136728/1‑148 (MQ=255) gCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGttt < 2:13659/148‑1 (MQ=255) cTAAGCAAGAAGAACTAGTTAAAGCATTTA‑CAGCCATTACTTAAAGAAGAGCAATTTAGCTCCCAGGGCGACATCGTAGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGAATGTTGAACAAGTTTg > 2:588357/1‑148 (MQ=255) aaaGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGt < 1:473512/148‑1 (MQ=255) aaGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAACGAAGAGAATTTTAGCTCCCAGGGAGAAATCGTCGCCGCGTTGCAGGAGAACGGCTTTGCCAATATTAATCAGTTTAAAGTCTCGCGGATGTTGACTAATTTTGGt < 2:958768/148‑1 (MQ=255) aaGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGt < 2:466568/148‑1 (MQ=255) aGCAAGAAGAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTg > 2:642088/1‑148 (MQ=255) aGCAAGAAGAACTAGTCAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATCTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGc < 1:114116/149‑1 (MQ=255) aagaagAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTgt > 1:1088988/1‑149 (MQ=255) aagaagAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTg < 2:1127487/148‑1 (MQ=255) aagaagAACTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGACGCGTTGCAGGGGCAAGGCTTTGCCAATATTAATCAGTCTAAAGTCTCGCGGGTGTTGACCAAGTTTGGTGCTgt > 1:889892/1‑149 (MQ=255) gaagaaCTAGTTAAAGCATTTA‑AAGACATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTgtac > 1:687905/1‑149 (MQ=255) aaCTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTgtacgtg > 2:1193019/1‑147 (MQ=255) aaCTAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTgtacgta < 2:601969/148‑1 (MQ=255) aaCTAGTTAAAGCATTTA‑AAGCCATTACTAAATGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTgtacgta > 2:572796/1‑148 (MQ=255) tAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGTGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTacac > 2:659846/1‑148 (MQ=255) tAGTTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTacac < 2:63297/148‑1 (MQ=255) tAGGTAAAGCATTTA‑AAGCCATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACg < 1:471816/149‑1 (MQ=255) ttaaagcattta‑aagccaTTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCa > 2:1238888/1‑148 (MQ=255) aaagcattta‑aagccatTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAAt < 2:387357/148‑1 (MQ=255) aaagcattta‑aagccatTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAAt < 2:387846/148‑1 (MQ=255) aaagcattta‑aagccatTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATg < 1:895869/149‑1 (MQ=255) tta‑aagccatTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCAaaat > 1:1124274/1‑149 (MQ=255) | TCTTTCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTA‑AAG‑CATTACTTAAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCAAAAT > CP009273/3377960‑3378249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |