Predicted mutation
evidence seq id position mutation annotation gene description
RA CP009273 2,959,697 Δ1 bp coding (2097/2247 nt) ptsP ← fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,959,6940T.100.0% 548.7 / NA 117coding (2100/2247 nt)ptsPfused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (57/60);  total (57/60)

Only 100 of 123 total aligned reads displayed.

TATAACCCTCCGCGAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTCCCGGGCGATCATC  >  CP009273/2959548‑2959838
                                                                                                                                                  |                                                                                                                                                
  taACCCTCCGCGAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTAtttgc                                                                                                                                              >  1:1023371/1‑147 (MQ=255)
  taACCCTCCGCGAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTAtttgc                                                                                                                                              <  1:860387/149‑3 (MQ=255)
    aCCCTCCGCGAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTAtttgccc                                                                                                                                            <  2:1411652/149‑5 (MQ=255)
        tCCGCGAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCGTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCgcgc                                                                                                                                       <  2:463679/149‑1 (MQ=255)
          cgcgAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCACTGCGCCGCAGCAGGGA‑TTTGCCCCCGCTa                                                                                                                                     >  1:313552/1‑149 (MQ=255)
           gcgATTCAGCCCGCCCATGCCGTGACGCTCCATAAAGGCTGCCACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTAc                                                                                                                                    <  2:332512/149‑1 (MQ=255)
           gcgAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTAc                                                                                                                                    >  2:581973/1‑149 (MQ=255)
                tCAGCCCGCCAATGCCGCGACGCTCCATAAAGGCCGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAAc                                                                                                                               <  2:1273646/149‑1 (MQ=255)
                 cAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACg                                                                                                                              >  1:474742/1‑149 (MQ=255)
                  aGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGt                                                                                                                             >  2:240754/1‑149 (MQ=255)
                      cgaagttgctgcGACCCTCCACAAAGGCTCCAACCTGTTGGCGATCTTTGTTCGCCAGTTGCGCTTCCAGTCTACGCTGCGCAAGATTTCCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGt                                                                                                                         <  2:811762/143‑1 (MQ=255)
                        cccATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGCACGTCCGTTc                                                                                                                       >  1:667408/1‑149 (MQ=255)
                        cccATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACGTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTc                                                                                                                       <  2:793649/149‑1 (MQ=255)
                          cATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCAt                                                                                                                     <  1:1184552/149‑1 (MQ=255)
                          cATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCAt                                                                                                                     <  1:399475/149‑1 (MQ=255)
                          cATGCCGCGACGCCCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCAt                                                                                                                     <  1:106780/149‑1 (MQ=255)
                           aggCCGCGACGCTCCATAAGGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATa                                                                                                                    <  2:277059/147‑1 (MQ=255)
                             gCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGa                                                                                                                  <  1:1117659/149‑1 (MQ=255)
                             gCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGa                                                                                                                  <  1:1747541/149‑1 (MQ=255)
                             gCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACGACGCTGCGCAAGATTTTCTGCTTCGGCGCAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTCCAGGACAGCCGTTCATaaa                                                                                                                  >  2:507613/1‑147 (MQ=255)
                               cgcgACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACa                                                                                                                <  2:966536/149‑1 (MQ=255)
                               cgcgACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACa                                                                                                                >  1:1263867/1‑149 (MQ=255)
                               cgcgACGCTCCATAAAGGCTGCAACCTGAGGGCGAACCTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACa                                                                                                                <  2:824334/149‑1 (MQ=255)
                                  gACGCTCCATAAAGGCTGCAACCTGATGGCGAACCTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGAt                                                                                                             <  2:64433/149‑1 (MQ=255)
                                     gCTTCATATCGGCTGCCACGTGATGCTGAACTTCGGCCGCCGGCTGCCCTTCCAGCCTACGCTGCGCATGATTTTCTGCTTGTGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGc                                                                                                          <  1:1914665/149‑1 (MQ=255)
                                     gCTCCATACAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGc                                                                                                          <  1:366129/149‑1 (MQ=255)
                                       tCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGa                                                                                                        <  2:665992/149‑1 (MQ=255)
                                        ccATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGAt                                                                                                       <  1:720185/149‑1 (MQ=255)
                                         tctAAAGGCTGCAACCTGATGGCGGACTTCGGGCGCCAGTTGCGCTTCCAGTCTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGGCGCAGCAGGTA‑CTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATa                                                                                                      <  1:1418278/147‑1 (MQ=255)
                                         cATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAAATGGCGATa                                                                                                      >  1:1725772/1‑149 (MQ=255)
                                         cATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCAGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATa                                                                                                      <  2:1697278/149‑1 (MQ=255)
                                           tAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATAcg                                                                                                    >  1:854044/1‑148 (MQ=255)
                                              aGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGaaatagcttcccat                                                                                                 <  2:1706754/149‑14 (MQ=255)
                                               ggCTGCAACCTGATGGCGAACTTCGGTCGCTAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCCATGCGTCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAg                                                                                                <  1:175843/149‑1 (MQ=255)
                                               ggCTGCAACCTGATGGCGAACTTCAGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAg                                                                                                <  1:1734825/149‑1 (MQ=255)
                                                gCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGc                                                                                               <  1:1520266/149‑1 (MQ=255)
                                                   gCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCa                                                                                            >  2:1655893/1‑149 (MQ=255)
                                                   gCAACCTGATGGCGAACTTCGGTCGCCAGGTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTAGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCa                                                                                            >  1:1220458/1‑149 (MQ=255)
                                                     aaCCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAAt                                                                                          >  2:1621531/1‑149 (MQ=255)
                                                         tGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAgg                                                                                      >  2:125750/1‑149 (MQ=255)
                                                          gATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATTGACAGATGGCGATACCCAAGCCCAATGAGGa                                                                                     >  1:1711637/1‑149 (MQ=255)
                                                           ctggcgaccgaagttCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGAt                                                                                    >  1:394708/15‑149 (MQ=255)
                                                            tGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGACAGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGAtt                                                                                   <  1:593225/149‑1 (MQ=255)
                                                             ggCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGGTACCCAAGCCCAATGAGGATTg                                                                                  >  2:609607/1‑149 (MQ=255)
                                                                gAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATCAGGATTGCCa                                                                               >  2:1481429/1‑149 (MQ=255)
                                                                    ttCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGca                                                                           >  2:655260/1‑149 (MQ=255)
                                                                     tCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGcac                                                                          >  1:1505727/1‑149 (MQ=255)
                                                                      cGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGcaca                                                                         >  1:1622126/1‑149 (MQ=255)
                                                                         tCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATgg                                                                      >  2:218773/1‑149 (MQ=255)
                                                                          cGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAGGCCCAATGAGGCTTGCCACGCACATggg                                                                     >  1:710130/1‑149 (MQ=255)
                                                                          cGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATggg                                                                     <  1:302278/149‑1 (MQ=255)
                                                                          cGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTGGCCCGCGCTACAGAACGTCCGTTCATAGACAGAGGGCGATACCCAAGCCCAATGAGGATTCCCACGCACAgggg                                                                     >  1:1491127/1‑149 (MQ=255)
                                                                            ccAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGAt                                                                   <  1:317819/149‑1 (MQ=255)
                                                                            ccAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGAt                                                                   <  1:1071133/149‑1 (MQ=255)
                                                                             cAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATc                                                                  <  1:186884/149‑1 (MQ=255)
                                                                              aGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATcg                                                                 <  1:1287992/149‑1 (MQ=255)
                                                                                   cgcTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATcgcccgc                                                            <  2:1541426/149‑1 (MQ=255)
                                                                                   cgcTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATcgcccgc                                                            <  1:530941/149‑1 (MQ=255)
                                                                                    tcTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATcgcccgcc                                                           >  1:2006439/2‑149 (MQ=255)
                                                                                     cTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCTAAGTCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCa                                                          <  1:1277145/149‑1 (MQ=255)
                                                                                      ttCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCAt                                                         <  2:598278/149‑1 (MQ=255)
                                                                                      ttCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCAt                                                         >  1:406368/1‑149 (MQ=255)
                                                                                      ttCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCAt                                                         >  1:1710825/1‑149 (MQ=255)
                                                                                      ttCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCAAGCACATGGGACAGCCCGCCAt                                                         >  2:1545076/1‑149 (MQ=255)
                                                                                          aGACTACGCTGCGCAAGATTTTCTGCTTCCGCATAATCAATGCGCCGCAGCAGATA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCTGTACCCAAACCCAATGAGGCTTGCCACGCACATGGGATCGCCCGCCATTTCa                                                     >  2:1008164/1‑149 (MQ=255)
                                                                                           gACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCAc                                                    <  1:1274563/149‑1 (MQ=255)
                                                                                           gACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCAc                                                    <  2:1375943/149‑1 (MQ=255)
                                                                                           gACTACGCGGCGCAAGATTTTCTGCTGCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAGGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCAc                                                    <  2:647366/149‑1 (MQ=255)
                                                                                              tACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCCCCGc                                                 >  1:550801/1‑149 (MQ=255)
                                                                                                 gCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGcaca                                              >  1:1114407/1‑149 (MQ=255)
                                                                                                   tGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACaaa                                            >  1:1186301/1‑149 (MQ=255)
                                                                                                   tGCGCAAGATTTTATGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTCGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCAATTCACCGCCCaaa                                            >  1:1437349/1‑149 (MQ=255)
                                                                                                      gcAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCCCTCCACCGCATCAACgg                                         >  2:1132691/1‑149 (MQ=255)
                                                                                                       cAAGGTTTTCTGCTTCGGCATAATCAATGCGCCGCAGGAGGTA‑TCTGCCCGCGCTACAGAACGTCCGTTCATAGACAGCTGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAACCGga                                        <  2:1412776/149‑1 (MQ=255)
                                                                                                       cAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGga                                        >  2:1247578/1‑149 (MQ=255)
                                                                                                       cAAGACTTTCTGCCTCGGCATAATCACTGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCTAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGga                                        <  1:88837/149‑1 (MQ=255)
                                                                                                        aaGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGgag                                       <  1:637574/149‑1 (MQ=255)
                                                                                                        aaGATTTTCGGCCTCGGCATAATCAACGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGgag                                       <  2:1811261/149‑1 (MQ=255)
                                                                                                         aGATTTTCTGCTTCGGCATAATCAATGCGCCACAAGAATTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCAGTTCACCGCACAAACggcgc                                      >  1:489246/1‑146 (MQ=255)
                                                                                                          gATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGAt                                     >  1:380517/1‑149 (MQ=255)
                                                                                                            ttttCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCg                                   >  2:1574882/1‑149 (MQ=255)
                                                                                                            ttttCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCAGTTCACCGCACAAACGGAGATCg                                   >  1:1805728/1‑149 (MQ=255)
                                                                                                              ttCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGAt                                 <  2:288335/149‑1 (MQ=255)
                                                                                                                 tGCTTCGGCATAATAAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTcc                              <  2:1197190/149‑1 (MQ=255)
                                                                                                                    ttCGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAACCGGAGATCGATTCCagg                           >  2:1281722/1‑147 (MQ=255)
                                                                                                                      cGGCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTa                         >  1:1802198/1‑149 (MQ=255)
                                                                                                                        gCATAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCCCATGGGATCGCCCGCCATTTCCCCGCACAAACGGAGATCGATTCCATGTCtt                       >  2:458675/1‑149 (MQ=255)
                                                                                                                          aTAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGGGATCGATTCCATGTATTTc                     >  1:1217970/1‑149 (MQ=255)
                                                                                                                          aTAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCACCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTc                     >  1:1254660/1‑149 (MQ=255)
                                                                                                                          aTAATCAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTGCATAGACAGATGGCGATACCCAAGCCCAATGATGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTc                     <  1:877648/149‑1 (MQ=255)
                                                                                                                           tAATCAATGCGCCGCAGCAGGTA‑TGTGCCCGCGCTACAGTACGTCCGTTCATAGACAGAGGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGCAGATCGAATCCATGTATTTcc                    <  1:1421425/149‑1 (MQ=255)
                                                                                                                            aaccAATGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCg                   <  2:1014914/146‑1 (MQ=255)
                                                                                                                              tCAATGCGCCGCAGCAGGTA‑TTTGGCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCt                 >  1:1497040/1‑149 (MQ=255)
                                                                                                                                aaggggccgcAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTc               <  2:583499/144‑1 (MQ=255)
                                                                                                                                aaTGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCCTTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTc               >  1:553353/1‑149 (MQ=255)
                                                                                                                                aaTGCGCCGCAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGAACATGGGATCGCCCGCCATTTCACCGCCAAAACGGAGATCGATTCCATGTATTTCCGCTTc               >  1:1404798/1‑149 (MQ=255)
                                                                                                                                     gccgcAGCAGGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTCCCggg          >  2:379901/1‑149 (MQ=255)
                                                                                                                                         cagcagGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTCCCGGGCGat      <  1:538115/149‑1 (MQ=255)
                                                                                                                                           gcagGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCGTCCCGGGCGatca    <  2:1115402/149‑1 (MQ=255)
                                                                                                                                             agGTA‑TTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTCCCGGGCGatcatc  <  2:1389979/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
TATAACCCTCCGCGAATCAGCCCGCCCATGCCGCGACGCTCCATAAAGGCTGCAACCTGATGGCGAACTTCGGTCGCCAGTTGCGCTTCCAGACTACGCTGCGCAAGATTTTCTGCTTCGGCATAATCAATGCGCCGCAGCAGGTATTTTGCCCGCGCTACAGAACGTCCGTTCATAGACAGATGGCGATACCCAAGCCCAATGAGGATTGCCACGCACATGGGATCGCCCGCCATTTCACCGCACAAACGGAGATCGATTCCATGTATTTCCGCTTCCCGGGCGATCATC  >  CP009273/2959548‑2959838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑