| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 3,378,108 | +C | coding (47/471 nt) | argR → | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,378,107 | 1 | . | C | 96.4% | 173.1 / 0.7 | 56 | coding (46/471 nt) | argR | l‑arginine‑responsive arginine metabolism regulon transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base C (26/27); total (28/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01 | |||||||||||
CTCTTTCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑G‑C‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCAAAAT > CP009273/3377959‑3378249 | ctctTTCATAACAGTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGttaaagcatttaaa‑g < 1:12756/149‑1 (MQ=255) ttCATAACATTGTTGCAGCCGTCTGCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCCACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGttaaagcatttaaa‑g‑ccat < 2:507341/149‑4 (MQ=255) tCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTCGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGttaaagcatttaca‑g‑ccatt > 1:1111174/1‑145 (MQ=255) ccATTCTTTCAGCCTTCTTCAGGGCTGATTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTa < 2:345536/148‑1 (MQ=255) aCATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTCAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTa > 1:397113/1‑149 (MQ=255) ttattTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑aag > 2:1100389/1‑149 (MQ=255) ttattTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGACTAAGCAAGAAGAACTAGTTAAAGCATTTGAA‑GCC‑ATTACGTA‑‑‑aag > 1:214321/1‑149 (MQ=255) ttattTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGAACAATAATGTTGTATCAACCACCATATCGGGAGACTTATGCGAAGCGCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑GTTACTTA‑‑‑aag > 1:214443/1‑149 (MQ=255) ttCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑Aagaaga < 1:575489/149‑1 (MQ=255) ttCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑Aagaaga < 2:504192/149‑1 (MQ=255) ttCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑G‑CGATTACTGA‑‑‑Aagaaga > 2:308551/1‑149 (MQ=255) tCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAagag > 1:356308/1‑149 (MQ=255) cttcttCCGGGCTGTCTGTTTGCCTAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAAtt < 1:776387/149‑1 (MQ=255) cttcttCAGGGCGGACGGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAAtt < 2:943092/149‑1 (MQ=255) cttcttCAGGGATGAGTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAATCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAAtt < 1:911039/149‑1 (MQ=255) ttcttcAGGGCTGGCTGTTTGCATAAAAATTCATCTGTATGCACCATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAGGCTCGGCTAAGCAAGAAGCACTAGTGAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAACAGAGAAActt > 1:615681/1‑149 (MQ=255) tcttcAGGGCTGCCTTTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCCCCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTa < 2:125511/149‑1 (MQ=255) cttcAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATCCGAAGCTCGGCTACGCCAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATCACTTA‑‑‑AAGAAGAGAAATTTAg > 2:813261/1‑149 (MQ=255) ttcAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGc > 2:1012567/1‑149 (MQ=255) ggCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCa < 1:502502/149‑1 (MQ=255) tGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAggg > 2:804392/1‑149 (MQ=255) tGACTGTTTGCATAAAAATTCATCTGTATGCACAAGAATGTTGTATCAACCACCATATCGGGAGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATAACTTA‑‑‑AAGAAGAGAAATATAGCCCCGAggg > 1:689475/1‑149 (MQ=255) tGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGaa > 2:966857/1‑149 (MQ=255) cATAAAAATTCATCTTTATGCACAATAATGTTGTATCAACCACGATATCGGGTGAATTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTACA‑GAC‑ATTACCTA‑‑‑AAGAAGAGAACTTTAGCTCCCAGGGCGAAAtcgtc < 1:562315/149‑1 (MQ=255) tAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTcgc < 2:682879/149‑1 (MQ=255) tAAAAATTCATCCGTACGCACAATAATGCTGTATCAACCACCATAACGGGTGACATATGCGAAGCTCGACTAAGCAAGAAGAACTAGTTAAAGCAATAACA‑GCC‑ACAACACA‑‑‑AAGAAGAGAAATTCAGCTCACAGAGCGAAATCGgcgc > 1:630125/1‑149 (MQ=255) cTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTGAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGCAATTTAGCTCCCAGGGCGAGATCGGCGCCGCGTTGCAga > 1:523899/1‑148 (MQ=255) gTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAATAGAAATTTAGATCCCAGGGCGAAATCATCGCCGCGTTGgaggag > 1:1093643/1‑149 (MQ=255) tATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGGGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGc > 2:795449/1‑149 (MQ=255) gCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAg < 1:62513/149‑1 (MQ=255) gCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTAGGCTAAGCAAGACGAACTAGTTAAAGCCTTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTGCCCGCGGTGCCGGAGCAAg > 1:583509/1‑149 (MQ=255) acaATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGCAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGAAGGAGCAAGGc > 1:35350/1‑149 (MQ=255) caATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTAAAGAAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAg < 1:153624/149‑1 (MQ=255) aataatGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCtt < 2:356308/149‑1 (MQ=255) ataatGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCttt < 1:1008767/149‑1 (MQ=255) ataatGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCttt < 1:606627/149‑1 (MQ=255) ttgtATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCCGGAGCAAGGCTTTGACact > 1:545958/1‑147 (MQ=255) tgtATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAata < 2:254927/149‑1 (MQ=255) gtATCACCCACCATATCGGGTGACTTATGCTAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAatat < 2:462515/149‑1 (MQ=255) aTCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTa < 1:836717/149‑1 (MQ=255) cAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAAt < 1:1079646/149‑1 (MQ=255) caccaTATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGt < 1:1100389/149‑1 (MQ=255) caTATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAGGGCTTGGACAATATTAATCAGTCTa > 1:201608/1‑149 (MQ=255) tttCGGGTGACTTATGCGAAGCGCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTaaa < 1:189516/147‑1 (MQ=255) gTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTcg > 1:1111720/1‑149 (MQ=255) gACTTAGGCGAAGCTCCGCTAAGCAAGAAGAACGATTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGACGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTcgcg < 1:999197/149‑1 (MQ=255) cGAAGCGCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTGCTTA‑‑‑TATAATATAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGa < 2:1069902/149‑1 (MQ=255) gAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGAc > 2:472864/1‑149 (MQ=255) ggCTAAGCAAGAACAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGCAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGCCTAAAGTCTCGCGGATGTTGACCAAGtgt > 1:797479/1‑147 (MQ=255) gCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTg > 1:338842/1‑149 (MQ=255) gCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTg < 2:233872/149‑1 (MQ=255) gCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAACTCTCGCGGAGGTTGACCAAGTTTg > 2:629436/1‑149 (MQ=255) cTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTgg < 1:370545/149‑1 (MQ=255) gccagaagaACTAGTTAAAGCATTTAAATC‑C‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGATGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGTATGTTGACCAAGTTTGGTGCt > 1:647629/4‑149 (MQ=255) gCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGACATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCt < 2:397113/149‑1 (MQ=255) gCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCt < 2:31780/149‑1 (MQ=255) gCAAGAAGAACTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCt > 1:508614/1‑149 (MQ=255) aagaaCTAGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTgtacg < 1:962232/149‑1 (MQ=255) aGTTAAAGCATTTAAA‑GCC‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAACCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGc > 2:322114/1‑149 (MQ=255) taaagcatttaaa‑gcc‑atTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAAt < 2:496794/149‑1 (MQ=255) catttaaa‑gcc‑atTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCaa > 1:326103/1‑149 (MQ=255) ttaaa‑gcc‑atTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGTGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCAaaat < 2:214321/149‑1 (MQ=255) ttaaa‑gcc‑atGACCTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTATAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCAaaat < 2:214443/149‑1 (MQ=255) | CTCTTTCATAACATTATTTCAGCCTTCTTCAGGGCTGACTGTTTGCATAAAAATTCATCTGTATGCACAATAATGTTGTATCAACCACCATATCGGGTGACTTATGCGAAGCTCGGCTAAGCAAGAAGAACTAGTTAAAGCATTTAAA‑G‑C‑ATTACTTA‑‑‑AAGAAGAGAAATTTAGCTCCCAGGGCGAAATCGTCGCCGCGTTGCAGGAGCAAGGCTTTGACAATATTAATCAGTCTAAAGTCTCGCGGATGTTGACCAAGTTTGGTGCTGTACGTACACGCAATGCCAAAAT > CP009273/3377959‑3378249 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |