| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 42 (0.600) | 37/296 | 1.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 0 (0.000) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 73 (1.040) | 57/296 | 0.2 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 0 (0.000) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
TTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTT > CP009273/2282254‑2282542 | ttCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATaaggaag < 1:738270/149‑1 (MQ=255) ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCACCAGTTGA‑TGCCACCGCCATGGGTGAATATaaggaaggcg > 1:174607/1‑147 (MQ=255) atGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACAAGCTGGCTATCTTTTCCCAGGACAACACCATTACGTGTTTCACCCTACTAAACAGTTGAGTGCC‑TGGCTAGGGGTGAATGTAAGGAAGGTGCGAATa > 1:952475/1‑149 (MQ=255) tGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGACTATAAGGAAGGTGCGAATaa > 1:882860/1‑149 (MQ=255) cTGTTCTCCGTCAGTATTGATTTTCGTATTACTGGCGTTTCCATCAAGCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGc < 2:215295/149‑1 (MQ=255) gTTCTCCGGCCGGATTGATTGTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCgg < 1:798086/149‑1 (MQ=255) gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCACTGCTATGGGTGAATCTAAGGAAGGTGCGCATAACCGGGCAAAtc > 2:479862/1‑148 (MQ=255) aGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCACTGCTATGGGTGAATATAAGGGAGGTACGAATAAGCGGGGAAAttctt > 1:378948/1‑149 (MQ=255) tttCGTATTATTGGCGGTCCCATAAACCAGCTGGCTATCCTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGa < 1:864026/149‑1 (MQ=255) tattatTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGCATAAGCGGGGAAGTTCTTCTCGGCTGACTCAg > 2:43030/1‑149 (MQ=255) ttGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatt < 1:685356/149‑1 (MQ=255) cGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGtcatttcat < 1:1080565/149‑1 (MQ=255) cATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc > 1:930261/1‑149 (MQ=255) aTAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa < 1:193559/149‑1 (MQ=255) aGCTGGATATCTTTTTCCAGGACAACACCATGAACTGTCTCACCATATTCAACAGTTGA‑TGCCAATGCTATGGGGGATTATAAGGAAGGTGCGAGTGAGCGGGGAAATTCTTCTCGACTGACTCAGTCAGGTCGTTTCGTCATGTTTGa > 1:634150/1‑149 (MQ=255) aGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa > 1:776389/1‑149 (MQ=255) cTGGACATCTTCTTCCAGGACAACCACCTCAACTGTCTCACCATACTCAACAGTTGA‑TGCTAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc < 2:202105/149‑1 (MQ=25) atatCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt > 1:116253/1‑149 (MQ=255) cTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt > 1:192652/1‑149 (MQ=255) tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGCtttttt > 2:483467/1‑149 (MQ=255) tttttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATACAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt < 1:473615/149‑1 (MQ=255) ttCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc < 1:922286/149‑1 (MQ=255) cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGACTTTTTCCCCCg > 1:850917/1‑149 (MQ=255) cAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTGCATGTTTGAGCCGATTTTTTCTCCCg > 1:189007/1‑149 (MQ=255) acCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCt > 2:639524/1‑149 (MQ=255) ccATCCACTGTCTTACCTTACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt < 1:1030694/149‑1 (MQ=255) cATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg > 1:974643/1‑149 (MQ=255) cAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGagt > 2:752952/1‑147 (MQ=255) aCTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCa > 2:1096120/1‑149 (MQ=255) aCTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTGCATGTTTGAGCCGATTTTTTCTGCTGTAAATGCCTTGaactt > 1:852897/1‑146 (MQ=255) tGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc < 2:78984/149‑1 (MQ=255) tcACCATACTCAACAGTTGA‑TGCCAATGCTATCGGTGTACATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTAt < 2:882860/149‑1 (MQ=255) ccATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa > 2:332001/1‑149 (MQ=255) cAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttct < 2:116253/149‑1 (MQ=255) ttGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATACCTTGAATCAGCCTATTTAGACCGTTTCTTCg < 2:191571/149‑1 (MQ=255) gtGA‑TGCCAATGCTATGGGTGAATATAAGGAAAGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTGGACCGTTTCTTCg < 2:781614/148‑1 (MQ=255) a‑TGCCAATGCTATGGCTGAATATAAGGAAGGTGCGAATAAGCTGGGAAATTCTGCTAGGCTGGATAGGAGAGGTCATTTCTTCATGTTTGAGCCGCTTTTTTCTCCCGTAAATTCCTTGAATCTGCCTCGTTAGACCGCTTCTTCAccg > 1:66833/1‑148 (MQ=9) tGCCAATGCTATGGGGGAATATAAGGAAGGTGCGAATAAGCGGGGGAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCGGCCTATTTCGACCGTTTCTTCGccgt > 1:38409/1‑147 (MQ=255) gggTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAt < 2:930261/149‑1 (MQ=37) gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc > 1:755369/1‑149 (MQ=35) gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCATCTCGGCTGACTCAGTCATTTCATTACTTCATGTTTGAGCCGATTTTTTCGCCCGTAAATGCCTTGAATCAGCCGATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc > 2:742743/1‑149 (MQ=255) gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATCCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc > 1:713970/1‑149 (MQ=25) atatAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAg < 1:757320/149‑1 (MQ=32) tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCCTTTAAGGCGTTATCCCCAGt > 2:948248/1‑149 (MQ=14) ataAGGAAGGTGCGAATAAGCGGGGCAATTCTTCTCGGCTGCCTCAGTCATTTCATTTCTTCATGTTAGCGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCATGTTTAGACCGTTTCTCCGCCGTTTAGGTCGTGATCCCCAgct > 1:605201/1‑147 (MQ=11) | TTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGA‑TGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTT > CP009273/2282254‑2282542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |