New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 350323	34 (1.180)	3 (0.110)	3/256	NT	8.3%	noncoding (14/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	CP009273	= 350357	34 (1.250)					noncoding (48/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences

CGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACC  >  CP009273/350215‑350496                                                                                                                                                |                                                                                                                                            cGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGTATCCGGCACTGTGTGCTGA‑TGCCTGATgcgacg                                                                                                                                       >  1:337008‑M2/1‑143 (MQ=255) cGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGAt                                                                                                                                             <  2:192623/143‑1 (MQ=255) cGAGTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGTATCCGGCACTGTGTGCTGA‑TGCCTGATgcgacg                                                                                                                                       >  1:336997‑M2/1‑143 (MQ=255)  gATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGAGCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATg                                                                                                                                            >  2:70216‑M2/1‑142 (MQ=255)           aGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGCAGGTTGTTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCGGATGCGACGCTGa                                                                                                                                   >  2:425813/1‑143 (MQ=255)                 cgacccgtgagaTTTGCCGACCATTGATGTTCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCa                                                                                                                       <  1:203264/141‑1 (MQ=255)                  gATCCTGGAGATCTGACGACCAATGATGATCCTGCGTCGTTGGGTCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGttt                                                                                                                            >  2:226966/1‑143 (MQ=255)                                  cgacCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAAc                                                                                                      <  1:115983/149‑1 (MQ=255)                                    acCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGTCGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCg                                                                                                    <  1:102639/149‑1 (MQ=255)                                    acCATTGATGATCCCGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCg                                                                                                    <  1:368913/149‑1 (MQ=255)                                      cATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCAATGTGTGCCGA‑TGCCTGCTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGa                                                                                                        >  2:109035/1‑143 (MQ=255)                                        ttGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGTCGCGTTTTATCATGCCTACGGACCTGGAc                                                                                                      >  2:124916/1‑143 (MQ=255)                                         tgatgaTCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGt                                                                                               >  1:92362/1‑149 (MQ=255)                                           atgctCCTGCGTCGGTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCCCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGt                                                                                                   <  2:147005/143‑1 (MQ=255)                                             gatCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGa                                                                                           <  1:4759/149‑1 (MQ=255)                                              atCCTGCGTCGTTGGCTCAGATCCGCCAGGCGATGGAAGCGTAGGTTATTGTCGGATGCGTCGCGCGGTGCCTCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTGCGGACCTGAACCGTAgg                                                                                                >  2:450445/1‑143 (MQ=255)                                                catGCGGCGTTGGATAAGTTCTGTGAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTc                                                                                              >  2:217931/3‑143 (MQ=38)                                                 cTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAg                                                                                       <  1:438481/149‑1 (MQ=255)                                                   gcgcCGTTGGCTCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc                                                                                     <  1:200532/149‑1 (MQ=255)                                                        gtggggtCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTcg                                                                                <  1:48744/143‑1 (MQ=255)                                                            gATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGTACCGTAGGTCGGATAAGGCGCTCGCGTc                                                                            <  1:395468/149‑1 (MQ=255)                                                              tCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCGAAACCGTAGGTCGGATAGGGGGCTCGCGgcgc                                                                          >  1:308441/1‑149 (MQ=39)                                                                   tCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTCGGTCGGATAAGGCGCTCGCGCCg                                                                           >  2:75118/1‑143 (MQ=255)                                                                    ccGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGa                                                                    <  1:211429/149‑1 (MQ=255)                                                                                ggAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGGCTGATGCGACGCTGACGCGTTTTATCATGCCTACGAACCTGAACCGTAGGTCGGATAAGGCGGTAGCGGCGCATCCGACCACAGGCTCAg                                                        >  1:56813/1‑149 (MQ=38)                                                                                    gagTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTc                                                          <  2:476801/143‑1 (MQ=255)                                                                                        aGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGGGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGa                                                <  1:117593/149‑1 (MQ=255)                                                                                         ggTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGAt                                               <  1:317253/149‑1 (MQ=255)                                                                                          gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATg                                              <  1:472439/149‑1 (MQ=255)                                                                                          catggtGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGc                                                    <  2:75473/138‑1 (MQ=255)                                                                                                   ggATGCGTCGCGCGGNGCTTCCGGGACTGGGAGCCGA‑TGCTTGAGGCGCCGCTGACGCGTTTGATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGTCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGa                                     <  1:453003/149‑1 (MQ=255)                                                                                                       gCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATgcgacccatccgacaataacctactcttccatcgcctggcggatctgatccaacgacgccggatcatcaatggtcgtcagatctccaggatcgcgtccttcc                                       <  2:217652‑M2/143‑103 (MQ=255)                                                                                                         gTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATgcgacgcatccgacaatcccatactcttccatcgcctggcggatctgactgaacgaggttttatcgtctatggtcgtcagatctccgggatcgcgtccttcgca                                     <  2:457650‑M2/143‑105 (MQ=255)                                                                                                          tCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAc                                    >  2:442037/1‑143 (MQ=255)                                                                                                                    cATCCGGCACTGTGTGCCGAATGCACCGCgcgacgcatccgacaataacctactcttccatcgcctggcggatctgatccaacgacgcaggatcatcaatggtcgtaagatctccaggatcgcgtccttcgcaaatcgccggg                           <  2:390133‑M2/143‑115 (MQ=255)                                                                                                                     ctCCGGCTCGGTGGGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCa                         <  2:390304/142‑1 (MQ=255)                                                                                                                         ggCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGTGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCa               <  1:118937/149‑1 (MQ=255)                                                                                                                            aCTGTGGGCCGA‑TGCCTGATGCGCCGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTGGGATAATGCGGTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAc                  <  2:10797/143‑1 (MQ=38)                                                                                                                              tgtgtgCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCTCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt          <  1:72874/149‑1 (MQ=255)                                                                                                                              tgtgtgCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt          <  1:14569/149‑1 (MQ=255)                                                                                                                              tgtgtgCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATCCCTACGGACCCGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCACCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGtt          <  1:247883/149‑1 (MQ=255)                                                                                                                               gtgtgCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGttt         >  1:297700/1‑149 (MQ=255)                                                                                                                                            cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac   <  2:82618/143‑1 (MQ=255)                                                                                                                                             tGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAAGCCTACCCACTGTTTTTACAcc  >  2:51587/1‑143 (MQ=255)                                                                                                                                                |                                                                                                                                            CGATTTGCGAAGGACGCGATCCTGGAGATCTGACGACCATTGATGATCCTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGA‑TGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACC  >  CP009273/350215‑350496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.