| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 4,049,665 | A→C | I12S (ATC→AGC) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,049,665 | 0 | A | C | 97.7% | 257.4 / ‑4.9 | 87 | I12S (ATC→AGC) | glnL | sensory histidine kinase in two‑component regulatory system with GlnG |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (40/44); minor base T (0/2); total (41/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGG > CP009273/4049520‑4049810 | tGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGctct < 2:729093/149‑1 (MQ=255) agaAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGc > 2:42106/1‑149 (MQ=255) gaAGTAGCGCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGctct > 1:925811/1‑146 (MQ=255) aaGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGCGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTTATGGATGGCCCGGTTG‑TCATCGATTAACAAAATATTGTTAATCAGCGAGTTGAGGGTCTg > 1:326862/1‑146 (MQ=255) aaGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGccc > 2:235276/1‑149 (MQ=255) gTAGCTCAATAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGcc < 1:755015/146‑1 (MQ=255) gTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTGGAGGCGCTGCCCAg > 2:656794/1‑149 (MQ=255) tAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGccc < 1:306474/146‑1 (MQ=255) tAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGG‑CCACCTTTTTGTTCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGc > 2:1122628/1‑149 (MQ=255) aGCTCCACAGTTCCGGGAACGGTGTACCAAACCATTTGCGGGAGCTTGGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAACGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCa < 1:498420/146‑1 (MQ=255) gcgcAACAGTGCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAg < 1:36629/143‑1 (MQ=255) cAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCAt > 1:249302/1‑146 (MQ=255) cAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCAt < 1:158905/146‑1 (MQ=255) cAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCAt > 1:494297/1‑146 (MQ=255) aaCAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCggg < 2:866196/149‑1 (MQ=255) gTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCGCTGCCCAGCATCGGGc > 1:409414/1‑146 (MQ=255) ccGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGc < 1:157139/146‑1 (MQ=255) ggTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGt > 1:832850/1‑146 (MQ=255) gtgtACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGGTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCCGtt > 1:412325/1‑146 (MQ=255) tgtACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAGTCAGCGAGTTGAGGCTCTGCCAAGGATCGGGCTGCGTGCCTGTTg > 1:512731/1‑146 (MQ=255) gtACCAATCAATTTGCGGGAGCTTTGGGCGACCAGTTGTTGCGCGGCAGGGTTGGCGTTATGGCTTGTTAAGTTG‑GCATCGATAAGTTAAACACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCAt < 2:555952/149‑1 (MQ=255) gtACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGc < 1:889449/146‑1 (MQ=255) gtACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGc < 1:889486/146‑1 (MQ=255) aCCAAACAATGTGCGGGAGCTTGGGGCAAGTACTTGTTGCGCGGCAGGGTAGGCGGAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATaa < 2:61322/149‑1 (MQ=255) aaCAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATaaa > 1:416347/1‑146 (MQ=255) aaCAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCa > 2:536087/1‑149 (MQ=255) ttGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATAAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGtc < 1:959606/146‑1 (MQ=255) gggAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGaa > 2:810717/1‑149 (MQ=255) gggAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGaa > 2:810421/1‑149 (MQ=255) aGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCCCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATCAAGCAGTCTCCTGAACAg > 2:1091138/1‑149 (MQ=255) tttGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TAATGGATTAACAAAATAATGTTAATCGGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATACAGCAGTCTCCTGAACCGGtt > 2:384221/1‑149 (MQ=255) gggCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGtt < 1:165632/146‑1 (MQ=255) ggCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTg < 1:211458/146‑1 (MQ=255) ggCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGACCCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCAc < 2:1019571/149‑1 (MQ=255) gCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGc > 1:708369/1‑146 (MQ=255) aGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCAcc > 1:903690/1‑146 (MQ=255) ttgCGCGGCATGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGt < 1:2626/146‑1 (MQ=255) tggcgcGGGAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGt < 1:217616/144‑1 (MQ=255) ctgCCCGGCAGGGTTGGCCTAAGGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATTCAGGGTGCTCCTGAACAGGTTGCACCATTTTAGt < 1:743027/145‑1 (MQ=255) tgCGCGGCAAGGTTGGCGTAATAGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCAt < 2:81150/149‑1 (MQ=255) gcgcGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGc < 1:972048/146‑1 (MQ=255) cgcgGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCa > 1:1046879/1‑146 (MQ=255) cgcgGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCACCGGGCTGCGTGCCTGTTGCCATAAATCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATta < 2:745797/149‑1 (MQ=255) cgcgGCAGGGGTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCa < 1:806653/146‑1 (MQ=255) gcgGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGCGCTGCGCGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCAt < 1:874255/146‑1 (MQ=255) gcgACAGGGATGGCATAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCGCTGCCCAGCATCGGGCTGCGTGCCTGTTCCCATAAAGCAGTCTCCGGAACAGGGTGCACCACTTTCGTGCag > 1:910833/1‑145 (MQ=255) ggTTGGCGTAATGCATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGCGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCt < 1:541692/146‑1 (MQ=255) gCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTa < 1:545737/146‑1 (MQ=255) cGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGa > 2:283561/1‑149 (MQ=255) tGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTCTTTACGGATa > 1:775453/1‑146 (MQ=255) ggATCGCCAGGTTG‑TTATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa < 2:398811/149‑1 (MQ=255) ggATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa < 2:462720/149‑1 (MQ=255) gATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaac > 1:90989/1‑145 (MQ=255) aTCGCCAGGTTG‑TCATTGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaa > 1:735122/1‑146 (MQ=255) aTCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGAATTATAGCTTTTTATGGAGaaaa > 1:675012/1‑146 (MQ=255) aTCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCGGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTGTTTACGGATAAAAAgc < 2:276499/149‑1 (MQ=255) tCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTGGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATaaaaa < 1:778120/146‑1 (MQ=255) ccAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAAAAGGTTGCACCATTTTAGTGAATTATAGCTTTTTACGGATAAAAAgcg > 1:105851/1‑146 (MQ=255) cAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGaa < 2:200488/149‑1 (MQ=255) ttG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCAt < 2:1085726/149‑1 (MQ=255) tCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCAt < 1:1034391/146‑1 (MQ=255) tCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGATGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCag > 2:60009/1‑149 (MQ=255) cATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACATGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCaga < 2:254965/149‑1 (MQ=255) aTCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCagag > 2:337767/1‑149 (MQ=255) aTCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCa > 1:165212/1‑146 (MQ=255) tCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAgaga > 2:1130124/1‑149 (MQ=255) tCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAACATCGGGCTGCGTGCCCGGTCCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTGTACGGGTAAAAAGCGCGACGCATCAgaga > 2:164310/1‑149 (MQ=255) tCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCCGCCCAGCATCGGGCTGCGTGCCTGCTGTCACAAAGCGGTAAACTTAGTGGGTGGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAgaga < 2:273123/149‑1 (MQ=255) cGATTAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGaa > 2:198368/1‑149 (MQ=255) cGATTAAAAAAATACTGGTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGATTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCaga < 1:674840/146‑1 (MQ=255) ttAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTg > 2:838455/1‑149 (MQ=255) ctAACAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTg < 2:361760/148‑1 (MQ=255) aaCAAAATACTGTTAAGCAGCGAGTTGGGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGAc < 2:119302/149‑1 (MQ=255) aCAAAATACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACg > 2:523014/1‑149 (MQ=255) aaaTACTGTTTATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACg < 1:1005932/146‑1 (MQ=255) aaaTACTGTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACg > 1:750826/1‑146 (MQ=255) gTTAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAg > 2:392653/1‑149 (MQ=255) ttAATCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGGAAAAAGc > 2:12680/1‑149 (MQ=255) agcggCGAGTTGAGGCCCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGc < 1:859937/142‑1 (MQ=255) tCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACCGGTTGCTTCCTGTGCGCGCAGTATAGCTTTTTCCGTATAAAAAGCGCGAAGCATCAGAGACTTGACGGAGAAAAAAGcc < 1:737509/146‑1 (MQ=255) tCAGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCAt < 2:157574/149‑1 (MQ=255) tCAGCGAGTGGCGGTCCTGCCTAGCATCTGGCTGCGTGCCTGTTGCCATAAAGTAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGGGAAAAAAGcc < 1:844908/146‑1 (MQ=255) aGCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCCTTTTACGGATAAAAAGCGCGCAGCATCAGCCACGTGACAGATAATAAAGCCCATGc > 2:311790/1‑149 (MQ=255) gCGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCa > 2:29368/1‑149 (MQ=255) cGAGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATGAAGCAGTCTCCTGAACAGGTTGCACCAGTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGCAGCATCAGAGAATTGACGGGGAAAAAAACCCATg > 1:865221/1‑146 (MQ=255) cgTTGAGGTTCGGCCCAGCATGGGGCTGCGTGCGTGTTGCCATAAAGCAGTTTCCTTAAAAGGTTGCACCATTTTAGTGCATTCTAGCTTTTTACGGATAAAAAGCGCGAAGCGTCTGAGATTTGACGGAGAAAAAAGCCCATGCa < 1:1019728/145‑1 (MQ=255) aGTTGAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCagag < 2:849591/149‑1 (MQ=255) gAGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATgg < 2:573485/149‑1 (MQ=255) aGGCTCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATggg < 2:1108298/149‑1 (MQ=255) aTCTGCCCGGCAGCGGGCTGCGTGCCTTTTTCTATAAACCCGTCTCCTGAATAGGTTGCATCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAACCATGAGAGAATTGAGGGAGAAAAAAGCCCATGCAGAGATggg < 1:432276/146‑1 (MQ=255) | TGAGAAGTAGCTCAACAGTTCCGGTAACGGTGTACCAAACAATTTGCGGGAGCTTTGGGCGAGCAGTTGTTGCGCGGCAGGGTTGGCGTAATGGATCGCCAGGTTG‑TCATCGATTAACAAAATACTGTTAATCAGCGAGTTGAGGATCTGCCCAGCATCGGGCTGCGTGCCTGTTGCCATAAAGCAGTCTCCTGAACAGGTTGCACCATTTTAGTGCATTATAGCTTTTTACGGATAAAAAGCGCGAAGCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGG > CP009273/4049520‑4049810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |