New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360104 =	NA (NA)	37 (1.920)	30/276	NT	NA	intergenic (‑38/+557)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	= 360286	NA (NA)					intergenic (‑220/+375)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

GTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTC  >  CP009273/359958‑360249                                                                                                                                                   |                                                                                                                                                   gTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt                                                                                                                                                  >  2:100577/1‑149 (MQ=255)    gTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTcc                                                                                                                                               <  1:216279/149‑1 (MQ=255)       cAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCATCGCCACCATCCAGTGCAGGATCTTCTATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg                                                                                                                                            <  1:9167/149‑1 (MQ=255)            aGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGtt                                                                                                                                       >  2:143771/1‑149 (MQ=255)                     aaCTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATTATAAGCTGTCAAACATGAGAATTCCGATCCCCAAGTCCTGGCAGTTTATggcggg                                                                                                                              <  1:104484/149‑1 (MQ=255)                         gTTTACCTTGTGGAGCGACATCCAGAGGCACTGCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATGAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTc                                                                                                                          <  2:211903/149‑1 (MQ=255)                                ttGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACTTGAGAATTCCGATCTCCAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCg                                                                                                                   <  1:169099/149‑1 (MQ=255)                                ttGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGACGTCCTGcccc                                                                                                                   >  1:104928/1‑148 (MQ=255)                                                             cGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATTATAAGCTGTCAAACATGTGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGACCACCACCCTCCCGGCCGCTGGTTCCGAACGt                                                                                      >  1:136620/1‑149 (MQ=38)                                                                                aTCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCAATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggcgg                                                                   >  1:105217/1‑149 (MQ=255)                                                                                                      aGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTACCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCg                                            >  1:287931/1‑149 (MQ=255)                                                                                                                     aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAACTCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGacaaacaa                             <  2:288018/149‑1 (MQ=255)                                                                                                                      atcTGCCACACATGTGAATCCGTACCCCCAATTCCTGGTGGTTTATGGCGGGCGCCCCGCCCGCCACCCTCCGTGCCGTTGATTCGCACCGTGCAAACCCGGTCCCGGCGGATTTG‑TCCTACCCAGGAGAGCGTTCACCGACAaacaac                            <  2:215531/147‑1 (MQ=11)                                                                                                                      aGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAaacaac                            <  1:138410/149‑1 (MQ=255)                                                                                                                      aGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATAGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGCGCGTTCACCGACAaacaac                            >  1:90147/1‑149 (MQ=255)                                                                                                                        cTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCATCGTTCATATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAAACAACAg                          <  1:102921/149‑1 (MQ=255)                                                                                                                          gTCAAACCTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGTTTCTGGTGTATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAAACAACAGAt                        <  1:87566/149‑1 (MQ=17)                                                                                                                          gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCATCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTCCCCAGGAGAGCGTTCCCCGGCAAACAACCGAt                        >  2:120575/1‑149 (MQ=17)                                                                                                                             aaaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaa                     >  1:314918/1‑149 (MQ=255)                                                                                                                                  tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGaa                <  1:48867/149‑1 (MQ=255)                                                                                                                                  tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAAACAACAGAGAAAACGaa                >  1:323920/1‑149 (MQ=255)                                                                                                                                   gtgtggcgcggcaccccATGCCGGGCAGTGTCGGGCGGTGGTCCGGCCCGCCTCCCGCCGGGCCGTTGCTTCGCAACGGTCAAATCCGCTCCGGGCGGATTTG‑TCCTCCTCGGGAGCGCGTTCACCGACAAACAACAGATAAAACGaaa               <  2:262982/136‑1 (MQ=0)                                                                                                                                           ggtgcgtcAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCCCCCTCCGGGCCGTTGCCTCGCAACGTTCAATTCCGCTCCTGGCGTATTTG‑TCCTACTCAGGAGGTCGTTCACCGACCAACAACCGATAAATCGAAAGGCCCAGt       <  2:323920/142‑1 (MQ=11)                                                                                                                                                cccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGTGGATAAGAAAATAGT‑ATGACATCAAACACCGCCAAACAACAGAGAAAACGAAAGGCCCAGTCTTTc  >  2:323490/1‑149 (MQ=11)                                                                                                                                                   |                                                                                                                                                   GTAGTTCAGGCAGTTCAATCAACTGTTTACCTTGTGGAGCGACATCCAGAGGCACTTCACCGCTTGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTG‑TCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTC  >  CP009273/359958‑360249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.