Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	CP009273	2,400,257	IS5 (+) +4 bp	intergenic (‑137/‑780)	lrhA ← / → alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2282398 =	NA (NA)	58 (0.770)	47/296	0.7	100%	noncoding (1195/1195 nt)	IS5	repeat region
	?	CP009273	2400257 =	0 (0.000)					intergenic (‑137/‑783)	lrhA/alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2
*	?	CP009273	= 2283592	NA (NA)	109 (1.450)	71/296	0.0	100%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	= 2400260	0 (0.000)					intergenic (‑140/‑780)	lrhA/alaA	transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2

AAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2282524‑2282398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTC  >  CP009273/2400257‑2400404                                                                                                                                                                                                                                                                                      AAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGCAAACATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑CTTGT                                                                                                                                >  1:492099/1‑149  aaaGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTT                                                                                                                               <  1:159556/146‑1    TGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCC                                                                                                                             <  1:21718/149‑1      GCGAAGAGACGGACTAAATATGCTGATTCAAGGCATTTACGGGAGAAAATATCGGCTTAGACATTAAGAAATGAAAGGACTTAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTGCCCTAAAAAAGCGACTCAC‑ATTGTTCCGT                                                                                                                           <  1:253478/149‑1      GCGAAGAAACGTTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCACTTATCCCCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGT                                                                                                                           <  1:1215854/149‑1      GCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAATTGAAATTTCTGTGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGT                                                                                                                           <  1:19542/149‑1        GAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTA                                                                                                                         >  1:1053689/1‑149        GAAGAAACCGCCTAAATAGGCTGACTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACAGGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTA                                                                                                                         <  2:981222/149‑1          AGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGGATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGAGTCAC‑ATTGTTCCGTTATA                                                                                                                       <  2:792939/149‑1            AAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAAT                                                                                                                     <  1:722046/149‑1              ACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGC                                                                                                                   <  1:1229319/149‑1                  TCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGA                                                                                                               >  2:702538/1‑149                   CTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAA                                                                                                              <  1:189248/149‑1                      AATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTA                                                                                                           >  2:460385/1‑149                      AATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATCACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTA                                                                                                           >  1:843554/1‑149                       ATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAG                                                                                                          >  2:9917/1‑149                             TGATTCTAGGAATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACA                                                                                                    <  1:889538/149‑1                             TGATTCAAGGCATTTACGGGAGAAAAAATCGTCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑CTCGTTCCGTTATAATGCCTGAAGTAGATCACA                                                                                                    <  1:297775/149‑1                             TGATTCAAGGCATTTAAGGTAGAAAAAATCGGCCTAATCAAGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCATCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACA                                                                                                    <  1:717881/149‑1                                    AGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCACGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATg                                                                                             >  2:35911/1‑148                                          TTACGGGAGAAAAAACCGGCTCAAACATGAAGAAATGAAATGACTCGGTCAGTCGAGAAGACTTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGTGACTCAC‑ATTGTTCCGTTATAATCCCTGAAGTAGATCACAGAATATATCTTCA                                                                                       <  2:679400/149‑1                                           gACGCGATAAAAAATCGTCTCAACATTGCAGAAATGAATTTACTGCGTCAGCCGAGATGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAG                                                                                      <  1:431899/148‑1                                           TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATTCCTGAAGTAGAGAACAGAATATATCTTCAG                                                                                      >  2:500111/1‑149                                           TACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACCCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAG                                                                                      <  2:1076304/149‑1                                            ACGGGAGAAAAAATCGGCTCAATCATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGG                                                                                     <  1:718851/149‑1                                               GGAGAAAAAATCGGCTCAAACAGTAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCAACATACCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGAT                                                                                  <  2:155310/149‑1                                                GAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATC                                                                                 >  1:1226007/1‑149                                                   AAAAAATCGGCTCAAACATGAAGAAATGGAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA                                                                              <  2:354250/149‑1                                                   AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCCCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATAACTTCAGGGATCGCA                                                                              >  1:258329/1‑149                                                   AAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATATCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA                                                                              >  2:988696/1‑149                                                     AAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAAGCGATTTTTCTCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATA                                                                            <  1:1151397/149‑1                                                       aagtGGCTCAAACATGAAGCAATGAAATGACTGGGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATC                                                                          <  2:247595/145‑1                                                          cgtCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAT                                                                       <  1:700841/146‑1                                                          CGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAT                                                                       <  2:843554/149‑1                                                          CGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAT                                                                       <  1:1124797/149‑1                                                             CTCAAACATGATGATATGAAATGTCTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAA                                                                    <  1:244066/149‑1                                                             CTCAAACATGAAGGAATGAAATGACTGAGTCAGCCGAGAAGAATTTCACCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGGTCTCGGAACCTATCTTCAGGGATCGCATGTCccttac                                                                    >  2:935471/1‑143                                                             CTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACCCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAA                                                                    <  2:371853/149‑1                                                              TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAG                                                                   >  2:402888/1‑149                                                              TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTACGTTATAATGCCTGAAGTAGATCACAGAATATATCTCCCGGGGTCGCATATATATTAAG                                                                   >  2:499660/1‑149                                                               CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCCTATCTATTAAGT                                                                  >  2:173039/1‑149                                                                AAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTT                                                                 >  1:1061435/1‑149                                                                            ATGAAAGCACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCTCCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGGAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTT                                                     <  1:370560/149‑1                                                                                            AGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTCCTCACTCTTTTCTATTTATGACATGCG                                     >  2:1167274/1‑149                                                                                             GCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGC                                    <  2:1019705/149‑1                                                                                                 AGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGT                                <  1:24269/149‑1                                                                                                   AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGTCTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTT                              <  1:708720/149‑1                                                                                                   AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGCTCACAGAATATATCTTCAGGGATCCCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTT                              >  1:41033/1‑149                                                                                                     GAATTTCCCCGCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGT                            <  1:1048898/149‑1                                                                                                               GCTTATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAA                  <  1:402888/149‑1                                                                                                                   ATTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAAAGCCTGAAGTAGATCACAGAATATATCTTCAGGGGTCGCAGAGCGATTAAGTTACTCACTCTTTTCTATTTATAAAATGAGCGTCTTTGTATGAATGGAAAAGT              >  2:1083895/1‑149                                                                                                                    TTCGCACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGGGTTTGTATAAATGTAAAgttg             >  2:821061/1‑145                                                                                                                      CGCTCCTTCCCTAAAAAAGCGACTCAC‑ATTGTTTCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAG           <  1:382349/149‑1                                                                                                                         ACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATGTATGACATGCGCGTGTTAGTATAACTGTAAATGTGAGTCC        >  2:497962/1‑149                                                                                                                         ACCTTCCCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTCCCCCACCCTGTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCC        <  1:655044/149‑1                                                                                                                             aCCCTAAAAAAGCGACTCAA‑ATTGTTCCGTTATAATGCCTGAATTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAATTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGT    <  2:104957/148‑1                                                                                                                              CCCTAAAAAAGCGACCCACTATTG‑TCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTT   <  2:1007273/149‑1                                                                                                                               CCTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTTGATCACAGAATCTATCTTCAGGGATCGCATATCTATTAAGTTGCTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTC  <  1:35911/149‑1                                                                                                                                                                                                                                                                                      AAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/2282524‑2282398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAAAAAGCGACTCAC‑ATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTC  >  CP009273/2400257‑2400404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.