| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3940048 | 137 (1.160) | 23 (0.200) | 9/280 | 13.8 | 14.9% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4161529 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 139 total aligned reads displayed.
AGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGC > CP009273/3939900‑3940196 | aGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgat > 2:1609982/1‑149 (MQ=32) gggtgggtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgat < 1:1664697/144‑1 (MQ=17) ggTGTGTAAGCGCAGCGATGTGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGACGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACa > 2:581051/1‑149 (MQ=21) cgtgtAAGCGCAGCGATGCGTTGAGCGAACCGGTACTAATGAACCGTGAGGCTTAACCTTTCAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGa‑a < 1:1364939/143‑1 (MQ=25) tgtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGAGGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGGTGA‑AAc > 1:639295/1‑144 (MQ=21) gtAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACa < 1:1512935/144‑1 (MQ=35) tAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGG‑AACAg > 1:1496226/1‑144 (MQ=21) tAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAg > 1:192482/1‑144 (MQ=34) tAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAg < 1:1657244/144‑1 (MQ=35) aacccacccaTGCCTTAACCTAACCGGTACTAATAAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCACCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGc < 2:891670/140‑1 (MQ=11) gcgcAGCGATGCGTTGAGCTTACCGGTACTAATGAACCGTGAGGGTTAACCTTACGACATAGTATAAAGTGCTTCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGaa > 1:829559/1‑144 (MQ=1) gcAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTg > 2:1049295/1‑149 (MQ=34) aGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGc > 1:1442681/1‑144 (MQ=35) cGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGGTGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGCTGA‑AACAGAATTTGCCTggcgg > 2:159071/1‑149 (MQ=17) cGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTggcgg < 2:1741769/149‑1 (MQ=35) gctgtGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTTAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTggcg < 1:1000525/140‑1 (MQ=25) cGTTGAGCCCACCGGCACTAATTAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGACTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTa < 2:505438/149‑1 (MQ=11) ttGAGCTAACCGGTACTAATGAACAGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAgc > 2:1479056/1‑149 (MQ=21) gAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAgcgc < 2:919768/149‑1 (MQ=35) cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCTGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCggt < 2:963442/149‑1 (MQ=25) cTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCggt > 2:656042/1‑149 (MQ=35) tcaacGGTTCGAATTAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAgcg > 1:17140/5‑144 (MQ=255) tAACCGGTACTAATGAACCGTGAGGATTAAGACTTGACAGTCGAATATGTTTTGGTGGA‑TGAGGGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGCTCTGATGA‑AACCGCATTTGCCTGGCGGCCGTcgcg < 1:384977/144‑1 (MQ=11) tAACCGGGACTAATGAACCGGGAGGCTGTAGATGGCGCCGCCGGTGGTTGTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAACTCCGAACGCAGACGCGGTCTGATGA‑AACAGACTTTGCCGGGCGGCCGTAgcg < 1:384800/144‑1 (MQ=2) aCCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTATTGGCGGA‑TGAGAGAAGATTTTCAACCTGATACAGATTAAATCAGAACGCAGAAGCGGGCGGATGA‑AACAGGATTTGCCTGGGGGCCGTAGGGCggtggg > 2:2700/1‑148 (MQ=11) cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCggt < 1:157085/144‑1 (MQ=35) cGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc < 2:511911/149‑1 (MQ=35) gTACTAATGAACCCTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCa < 2:638556/149‑1 (MQ=21) tACTAATTAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc < 2:738337/149‑1 (MQ=25) tACTAATGAACCGCTAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCggtggt < 1:218130/144‑1 (MQ=25) aCTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc < 2:1973543/149‑1 (MQ=35) tAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTg > 2:1703810/1‑149 (MQ=34) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc > 1:1587563/1‑144 (MQ=35) aTGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGGCCCACCTGAc > 2:1915175/1‑149 (MQ=25) aTGAAACGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAc < 2:1342857/149‑1 (MQ=25) tGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcc > 2:959497/1‑149 (MQ=34) gAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCCGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGTACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCt < 1:693409/144‑1 (MQ=21) aaCCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGGGGTCCCACCTg > 1:62209/1‑144 (MQ=25) cGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGAcc > 1:1725739/1‑144 (MQ=35) gTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc < 2:1484314/149‑1 (MQ=34) tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGcc < 2:1646852/149‑1 (MQ=35) gAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCg > 2:1182954/1‑149 (MQ=34) gggtttAACCTTACAACGCCGAAGTTGTTTTGGCGGA‑GGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAGCGCAGAAGCGGTCTGATCA‑AACAGAAGTTGCCTGGCGGCCGGAGCGCGGTGGTCCCACCTGACCCCAt < 1:1012959/140‑1 (MQ=1) gCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGc > 1:1311801/1‑144 (MQ=35) ttAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCg > 1:928736/1‑144 (MQ=34) ttAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTAGCGGCCGTAGCGCGGTGGTACCACCTGACCCCATGCCg > 1:231857/1‑144 (MQ=21) aaCCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGaa < 1:702783/144‑1 (MQ=35) aaCCCTAAAACGCCGAAGATGTTTTGGCGGA‑TGAGAGGAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAg < 2:764631/149‑1 (MQ=255) cAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCTTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGaa < 1:417269/144‑1 (MQ=21) cGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACACCATGCCGAACTCAGAAGTGAAACGCCg > 2:1015000/1‑149 (MQ=25) gAAGATGGTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGTACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCGGACCCCATGCCGAACTCAGAAGTGAAAc < 1:789675/144‑1 (MQ=255) aaGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTa < 2:1712540/149‑1 (MQ=35) aaGATGTTTTGGCGGA‑TGAGAGAAGATTCTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGAGAAACg > 1:1019495/1‑144 (MQ=25) aGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACACCATGCCGGACTCAGAAGTGAAACGc > 1:1832830/1‑144 (MQ=21) tGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc < 2:1856764/149‑1 (MQ=32) ttttGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATTAGAACGCAGAAGCGGTCTGATGA‑AACAGAATGTGCCTGGCGGTCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAg < 1:1191288/144‑1 (MQ=12) tttGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAAATCAGAAGTGAAACGCCGTAGCGCCGa > 2:906006/1‑149 (MQ=17) ttGGCTGA‑TTAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGAt < 2:852830/149‑1 (MQ=17) ttGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGGATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAGACGCCGTAgcg > 1:1366236/1‑144 (MQ=17) tGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAgcgc < 1:788509/144‑1 (MQ=32) ggA‑TGGGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAACGCCGAt < 1:1706314/144‑1 (MQ=17) ggA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGACTTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTCGCGCCGATGGTAg > 2:117456/1‑149 (MQ=17) tGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAgtgt < 2:800337/149‑1 (MQ=32) gagagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGtgtg < 2:1927785/149‑1 (MQ=32) gagagaAGATCTTCAGCTTGATCAAGATTAAATCAGTGCTTAGATTCAGT‑TGTAGATTACATAAGTTTTCGTGCGTCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTa < 1:1256617/144‑1 (MQ=0) agagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTgg > 2:1329311/1‑149 (MQ=32) gagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAga > 1:1475518/1‑143 (MQ=17) gagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg < 2:742300/149‑1 (MQ=32) gagaAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg < 2:1363279/149‑1 (MQ=32) gaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGt < 2:63242/149‑1 (MQ=32) gaagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGt > 2:857908/1‑149 (MQ=32) aagaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGtc > 2:1936785/1‑149 (MQ=32) ggttttCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg < 1:26494/142‑1 (MQ=17) gaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg < 1:729442/144‑1 (MQ=32) gaTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGtctc > 2:1253721/1‑149 (MQ=32) cgttttCAGCGTGATCCAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTggg < 1:962891/142‑1 (MQ=12) tttCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTTCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCCTAGCGCCGATGGTAGTGTGGGGTCTcccc < 2:1215039/149‑1 (MQ=17) ttCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGGGGGGTCTCCCCa > 2:55531/1‑149 (MQ=17) ccTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGACGGTAGTGTGGGGTCTCCCCATGCgc > 2:1290305/1‑148 (MQ=17) tgctACAGATGAAATCAGAACGCAGAAGCTGTCTGATGA‑AACAGAACTTGCCTGGCGGCCGTAGCGCGGTTGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATg < 1:109032/141‑1 (MQ=11) aTACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTCGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGagaga > 2:211921/1‑148 (MQ=17) tACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCga < 1:1519614/144‑1 (MQ=32) tACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCga > 1:1153267/1‑144 (MQ=32) tACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGGGAGTa > 2:253337/1‑149 (MQ=17) aGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAggg < 2:1167563/149‑1 (MQ=32) gATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGa < 2:1616354/149‑1 (MQ=32) aTTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGaa < 2:1552419/149‑1 (MQ=32) tAAATCAGAACGCAGAAGCGGCCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACt < 2:1560737/149‑1 (MQ=17) tAAATCAGAACGAAGAAGCGGTCTGATGA‑AACAAAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACt < 2:252605/149‑1 (MQ=17) aTCAGAATGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGcc < 2:1014190/149‑1 (MQ=17) cAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAg < 2:1868421/149‑1 (MQ=32) gAACGCAGAAGCGGTCTGACGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGTCCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCGTGCGAGAGTAGGGAACTGCCAGGc < 2:1474859/149‑1 (MQ=12) cGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAg < 1:1798617/144‑1 (MQ=32) aaGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAAtt < 2:395991/149‑1 (MQ=32) cGGTCTGATGC‑AACAGATTTTGCCTGGAGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATGaaa < 1:1389281/144‑1 (MQ=255) cGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGGGAGTATGGAACTGCCAGGCATCaaa < 1:1781746/144‑1 (MQ=17) cGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg < 2:1856159/149‑1 (MQ=32) gTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACCCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCa < 2:82210/149‑1 (MQ=17) tgatga‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAg < 1:1563606/144‑1 (MQ=32) tga‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGc < 2:1292178/149‑1 (MQ=31) | AGGCCGGGTGTGTAAGCGCAGCGATGCGTTGAGCTAACCGGTACTAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGA‑TGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGA‑AACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAAGCAGTAAGC > CP009273/3939900‑3940196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |