| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,702,919 | C→G | 7.4% | Q582E (CAA→GAA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,702,919 | 0 | C | G | 7.4% | 217.0 / 8.4 | 88 | Q582E (CAA→GAA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base C (43/38); new base G (2/5); total (45/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.61e-01 | |||||||||||
AGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCC > CP009273/1702771‑1703065 | aGCGGAAGCCAGAGGCAAACAGGCGGGAATGCAGCAAACTAACGACGCAGCAACCGCTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGaac < 1:833911/149‑1 (MQ=37)aGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGaac > 1:203496/1‑149 (MQ=255)aGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGaac > 1:819587/1‑149 (MQ=255) gcAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGaacaac < 1:124607/149‑1 (MQ=255) cacgCCAGAGCGAAACAGGCAGAACCGCAGCAAACTAACGACGCAGCACCCGTTGCTGATCCACGTAAACCTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAacaaca < 1:1065589/146‑1 (MQ=255) aaGCCAGCGCGAAACAGGCAGAAGTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGaacaaccg > 2:846311/1‑147 (MQ=255) aGCCAGACCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCCGCTATCGCCCGCGCCAAAGCGCGGAAGCGGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAgg < 2:381074/149‑1 (MQ=255) cAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCg > 1:564335/1‑149 (MQ=255) cAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCg > 1:300530/1‑149 (MQ=255) gggCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGAt < 2:25844/147‑1 (MQ=255) agCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATc > 2:718985/1‑149 (MQ=255) aCAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGGACCgcgcg > 1:865962/1‑148 (MQ=255) aGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCaaa < 1:321014/149‑1 (MQ=255) cAGAACGGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCATCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCGACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAgct < 2:925773/149‑2 (MQ=21) gAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGATCGATCCCCGCAAAgcggc > 2:383662/1‑149 (MQ=255) aCTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTTGGAAACAGCGA‑CTCCCGGGCCGCATCAGTCAAGCTGGAACAGGAACAGGCCAAAGCGCAACCAGAACAACAGGACGATCCGCGCAAAGccgccg > 1:293716/1‑149 (MQ=255) cTGCAGCAACCTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGt < 1:886300/149‑1 (MQ=255) tGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTc < 2:1094803/149‑1 (MQ=255) tGCACCAAACCAACGACGCAGCAACCTTTGCTGATCCACGGAAAACGGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAACCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTc < 2:121296/149‑1 (MQ=18) gcagcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCg > 1:832542/1‑149 (MQ=255) gcagcaAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCg > 1:1108606/1‑149 (MQ=255) gccaacgacggacgCAGCAACCGGGGCCGATCCACGCAAAGCCGCCGTT‑GAAGCAGCTATCGCCCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 2:819587/139‑1 (MQ=11) aCTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGGCGAAGCCGc > 2:136885/1‑149 (MQ=255) cgacgCAGCCACCGTGGCTGAGCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCATAGCCGCCGTCGAAGCCGCTATTg < 1:680001/149‑1 (MQ=255) cgacgCAGCAACCCTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg < 1:280805/149‑1 (MQ=255) gacgCAGCAACCGTTGCTGATCCACGTAAAACTGCAGGC‑GTAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCCATTGc > 1:605757/1‑149 (MQ=18) gcagcaACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGTGACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCg > 1:1212373/1‑149 (MQ=255) gcagcaACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCg < 1:951421/149‑1 (MQ=255) gcagcaACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCg > 1:1121576/1‑149 (MQ=255) aCCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGACCCGCGCAGACACGCCGTCGCAACCGCTATTGC‑CCGCGCCag > 2:286644/1‑148 (MQ=18) cgcgtttccgcgctgTAAAGCCGCCGTC‑GAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGAGCCAAAg < 2:1065469/135‑1 (MQ=1) gTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGGCGTCGAAGCCGCTATTGC‑CCGTGCCAAAgc > 1:284421/1‑149 (MQ=255) gTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAgc > 1:1001982/1‑149 (MQ=255) aTCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAg > 1:793101/1‑149 (MQ=255) aTCCACGTAAAACCGCCGTG‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAg < 1:308069/149‑1 (MQ=255) cACGTAAAACTGCCGTT‑GAAGCGGCTAGCGCCCGCGCCACAGCGCGCAAGCTGGCACAGCAACAGGCTAATGCGGAACCAGGACACCGGGTCGTTCCGCGCATAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCagcgctgtctggggg < 2:324273/149‑15 (MQ=17) cGTAAGACCGCCGTT‑GAAGAGGCTATCGCCCGCGCCAAAGCGCGCAAGCCGGACCAGCAACAGGCTCATGCGGAACCAGAACAACAGGTCGATCCGCGCAACGCCGCCGTCGAAGCCGCTACTGC‑CCGTGCCAAAGCGCGCAAGCTGGa < 2:336841/149‑1 (MQ=14) cGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGa < 1:421143/149‑1 (MQ=255) cGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGa < 1:421044/149‑1 (MQ=255) cGTAAAACTGCCGGT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGa < 2:246477/149‑1 (MQ=255) gTACAACTGCCGTG‑GAAGCAGCTACCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGaa < 2:834345/149‑1 (MQ=255) tAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCGAGCTGGGAc > 1:1065469/1‑149 (MQ=255) aaaaCTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAACGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACa < 2:922473/149‑1 (MQ=255) tgacGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAAc < 2:1164119/146‑1 (MQ=255) tGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCATGCTGGAAGAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCGAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAGCCGCGCAAGCTGGAACAGCaaa > 2:926681/1‑148 (MQ=14) ggCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCACGCAAGCTGGAACAGCAAc < 2:293716/148‑1 (MQ=255) ccGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAg > 1:86155/1‑149 (MQ=255) gTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGGACAGCAACAGGCTAATGCGGAACCAGAACAACAGCACCATCCGCGCTAAACGGCCGACGCAGCCGCTATTAC‑ACGACCCAAAGCACGCAAGCTGGAACAGCAAccgcc > 2:4155/1‑145 (MQ=14) gTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGGGCCAGAACAACAGGACGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGA‑CCGTGCCAAAGAACGCAAGCGACAACAGCAACAGGc > 2:346507/1‑149 (MQ=14) gTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATGGC‑CCGGGCCAAAGCACGCAAGCGGGAACAGCAACAGGc > 2:775693/1‑149 (MQ=255) tt‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg < 2:993849/111‑1 (MQ=255) tt‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg > 1:993849/1‑111 (MQ=255) gAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGTACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTaa < 1:301210/149‑1 (MQ=255) aaGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGt > 1:509807/1‑94 (MQ=255) aaGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGt < 2:509807/94‑1 (MQ=255) agcagcTATTGACCGCGCCAAAGCGCGCAAGCTGGATCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 2:549526/149‑1 (MQ=255) agcagcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCACGCTGGAACAGCAACAGGCTAATg < 1:679880/149‑1 (MQ=255) agcagcCAGCGCCCGCGCCAACGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATg < 2:700140/149‑1 (MQ=255) gcagcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAGGCGCGCAGGCTGGAACAGCAACAGGCTAATGc > 1:10955/1‑149 (MQ=255) gcagcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCCGGAACAGCAACAGGCTAATGc > 1:679129/1‑149 (MQ=255) gcagcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGc > 2:1015263/1‑149 (MQ=255) gcagcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGCCGAAGCCGCTATTGC‑ACGGGCCAAAGCGCGCAAGCTGAAACAGCAACAGGCGAATGc > 2:288931/1‑149 (MQ=14) agcTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGTAGC‑ATCACGCCGAGCCAACGCGCGCAAACAGCAACAGCAACAGGCTAATGCgg > 1:897530/1‑149 (MQ=14) aTCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCGGGAACAGCAACAGGCTAATGCGGAAcg > 1:141593/1‑148 (MQ=255) tCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCaaa < 2:201273/110‑1 (MQ=38) tCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCaaa > 1:201273/1‑110 (MQ=40) cGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCag < 2:793101/149‑1 (MQ=12) cacgaaGCGCCCAAGCTGGCACAGCAACAGGCAAATGCGGAACCAGAACCACCGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGC‑CCGCGCCAAAGCGCGCAAGCTGGAACCGCAATAGGCTATTGCGGAACCagaattaca < 2:728016/145‑6 (MQ=14) ccAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAg > 1:44262/1‑149 (MQ=255) aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCg < 1:718985/149‑1 (MQ=255) aaGCTGGACCAGCAACAGGCTAATGCGTACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCcgcg < 1:706315/149‑1 (MQ=255) aGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCgcgc < 1:200908/149‑1 (MQ=255) cTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAAGAGGTCGATCCGCGaaa > 1:142656/1‑149 (MQ=255) cTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCaa > 1:697169/1‑149 (MQ=255) cTGGAACAGCAACAGGCTAATCCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCaa > 1:879023/1‑149 (MQ=255) aaCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGCACCAGACGCACTGGTCGATCAGAGCAAAgcc > 1:281327/1‑149 (MQ=14) aaCAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGGGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCGGAAGAAAAGGCGGATCCGCGCGAAggc > 2:292004/1‑147 (MQ=14) ccaCAGCCAAAGGCGGAACCAGAACCCCAGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGt < 2:194247/147‑1 (MQ=14) cAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTACTGCGGAGCCAGAAAGCCGGGGGCATCCGCGCAAAGCAGCAGt > 2:930520/1‑149 (MQ=11) aaCAGGCTAATGCGGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTc < 1:528918/149‑1 (MQ=255) aaCAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTc < 1:782357/149‑1 (MQ=255) ggcaaccgCGGACCCAGCACCACTGGCCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATCGC‑CCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 2:203496/142‑1 (MQ=14) cTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGCAGcc > 1:319898/1‑149 (MQ=255) cTAATGCGGAACCAGAACAACAGGTCGATCCGAACCAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc > 1:1225243/1‑149 (MQ=255) tAATGCGGAACCAGAACCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCg < 1:490571/149‑1 (MQ=255) tAATGCGGAACCAGAACCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCg < 1:1189888/149‑1 (MQ=255) tAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGa > 1:21505/1‑105 (MQ=40) gaaTGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACCGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCg < 1:352624/148‑1 (MQ=255) gCGGAAGCAGAACACCAGGCCGACCCCCGGAAAGCCGCCGTCGAAGCCGCGATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTAt < 2:648646/149‑1 (MQ=14) gCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACCGGCTAACGCGGTTTTACTAGAGCAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCtgt > 1:711142/1‑147 (MQ=14) gAACCAGCACAACGGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:1127598/149‑1 (MQ=255) aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGcc > 1:1145217/1‑149 (MQ=255) aaCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCGGCTATTGca > 1:574020/1‑148 (MQ=255) gcacaacaacTGGTCGACCCGCGAAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGAAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCg < 1:460944/145‑1 (MQ=14) aGAACAACAGGTCGATCCGCGCAAAGCCACCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg > 1:1189963/1‑149 (MQ=255) aacaaaAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCCACCGGCTAATGCGGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGCGcc > 2:1135439/1‑149 (MQ=11) | AGCGCAAGCCAGAGCGAAACAGGCAGAACTGCAGCAAACTAACGACGCAGCAACCGTTGCTGATCCACGTAAAACTGCCGTT‑GAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGC‑CCGTGCCAAAGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCC > CP009273/1702771‑1703065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |