| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,641,817 | T→G | 8.6% | N1277T (AAC→ACC) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,641,817 | 0 | T | G | 8.6% | 152.9 / 5.7 | 72 | N1277T (AAC→ACC) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (31/33); new base G (3/5); total (34/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
ACCCAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCACGTTGCATTTGCAGCAAACGGGA > CP009273/2641672‑2641965 | aCCCAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGAACGACATCCTGCCCGGTGCTTGTACATAGCGCAGCAGACGCCCATTACCCCGGGTaa > 1:161125/1‑149 (MQ=255) cccAGCGTAGCCTTTTGCTGACAGGCCAACCCCCGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAAt < 1:883791/149‑1 (MQ=255) cccAGCGGAGCCTTTTGCTGGCGGGGCAGCGCCAGCGCAGCGTAAGACTGTGCGGCGAATTTACTGGCTTTGAGATTATCTGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAAt < 2:507531/149‑1 (MQ=255) cccAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAAt < 2:826198/149‑1 (MQ=255) cccAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAAt < 1:603447/149‑1 (MQ=255) cccACCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAAt < 1:39224/149‑1 (MQ=255) ccAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGCCATCATGCCCGGATCTTGTAAATAGCGCAGCAGCCGCTCATTACCCCGGTTAATg > 2:156620/1‑149 (MQ=255) ccAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGGTAATg > 1:501197/1‑149 (MQ=255) ccAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCACAGCAGACGCTCATTACCCCGGTTAATg > 1:829485/1‑149 (MQ=255) cAGCGGAGCCTTTGTGTAACTGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATg‑g < 2:303064/149‑1 (MQ=255) aGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAAAAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑Gc > 1:256976/1‑149 (MQ=255) gCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTCATG‑GCg > 1:1021119/1‑149 (MQ=255) cGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCCTACGGGATCGACATCATGCCCGGATCTTGTAAATGTCGCAGCAGACGCCCATTAACCCGGTCAACG‑CCGt > 2:264810/1‑149 (MQ=255) acccTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGC‑CATTAACCGGGGTAATGAGCGTCTg < 2:818385/147‑1 (MQ=255) aGCCTTTTGCCGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATGTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTg < 1:416042/149‑1 (MQ=255) cTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGAAAGGATCTTGTAAATAGCGCAGCAGACGC‑CATTAACCGGGGTAATGAGCGTCTgctg < 2:6038/149‑4 (MQ=38) ttttGCTGACGTGCCAACACCAGCGCATCGTATGACTGTACGGCGTGTTTTCGACCGTAGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGC‑CATTAACCGGGGTAATGAGCGTCTgctgc < 1:346862/149‑5 (MQ=19) ttttGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGCACGTGTAAATAGCGCACCCGCCGCTCATGACCCCGGTTCAGG‑GCGTCTGTccg > 1:656339/1‑147 (MQ=255) ttttGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCgg > 1:694502/1‑149 (MQ=255) ttttGCTGACGGGCCAACACCAGCGCAGCGGAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGC‑CATTAACCGGGGTAATGAGCGTCTgctgc < 1:514876/149‑5 (MQ=38) cTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGCGACCCACCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGc < 1:904143/149‑1 (MQ=255) ggCCAACACGAGCGCAGCGTAAGACTGGCCGTGGAATTTACTGGCTTTGAGATTATCCGCCTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAAc < 2:508168/149‑1 (MQ=255) acacCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACGTCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGTCACGCTGTAACCCGGt > 2:831520/1‑149 (MQ=255) ccAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGGTAATG‑GGGTCTGTCGGCACGCTGTAACCCTGTTCg > 1:477138/1‑149 (MQ=255) cagcgcagcgTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGc < 2:1033011/149‑1 (MQ=255) agcgcagcgTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGcc > 1:676931/1‑149 (MQ=255) gcgcagcgTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCt > 2:634957/1‑149 (MQ=255) agcagcgTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCCGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACCTTGTAACCCTGTTCGCCTg > 1:368038/2‑149 (MQ=255) tAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGAc < 1:357621/149‑1 (MQ=255) aaGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGAcc < 1:971303/149‑1 (MQ=255) tACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGGCCAGGAAAt > 2:1114742/1‑149 (MQ=255) aCGGCGAATTGACGGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGGTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATc < 2:161125/149‑1 (MQ=255) ggCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCACCAGACGCGCATAACCCCGGTTAATG‑ACGTCTGTCGGCACGCAGTAACCCTGTTCGCCTGCGCGACCCAGGaaaccac > 2:314857/1‑145 (MQ=255) gAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCa < 1:58699/149‑1 (MQ=255) gAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCa < 1:271618/149‑1 (MQ=255) gAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACACGGAAATCCATCa > 2:452837/1‑149 (MQ=255) cggCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGcc < 1:421322/148‑1 (MQ=255) gCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGt > 1:194722/1‑149 (MQ=255) ctgtGAGAGTACCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAAGAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGGCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTc < 1:84982/146‑1 (MQ=255) cTTTGGGATTATCCGCGTACGGGATCGCCATCATGCCAGGATTTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTc < 1:230908/149‑1 (MQ=255) cTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTc < 1:634957/149‑1 (MQ=255) cTTTGAGAGTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTc < 1:674367/149‑1 (MQ=255) tttGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGTGCATCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAACTCCATCACGTAAGCCGTCa < 1:901782/149‑1 (MQ=255) tttGAGATTATCCGCGTACGGGATCGACAGCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCTGGTTAATG‑GCGTCCGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCa < 1:70968/149‑1 (MQ=255) ttATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTa < 2:51795/149‑1 (MQ=255) aTCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTAct < 1:985607/149‑1 (MQ=255) aTCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTAct < 1:609483/149‑1 (MQ=255) gTACTGGATCGCCCGCATGCTCGGATCTTGGAAATAGCGACGCAGACGCTCATCACCCCGGTTAATG‑GCGGCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGt < 1:469662/149‑1 (MQ=255) cGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCAc < 2:694502/149‑1 (MQ=255) gggATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCGTCACGTAAGCAGTCAGCCAGTACTCTTCGTCagc > 1:4873/1‑147 (MQ=255) gATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCAAGTAAGCCGTCAACCAGTACTCTTCGTCACCGt > 2:1101288/1‑149 (MQ=255) aTCGACATCGTGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTGAATG‑GCGTCTGTCGGCACGCTGTAACGCGGGTCGCCTGCGCGGACCAGGAAAACCATCACGTAAGCCGTCACGCAGTACTCTTCGTCACGGtt > 2:312161/1‑149 (MQ=255) aTCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGtt > 2:608736/1‑149 (MQ=255) aTCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGCCACCGtt > 2:333937/1‑149 (MQ=255) tCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGttt < 1:547235/149‑1 (MQ=255) aCATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTACTG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTa < 2:1167482/149‑1 (MQ=255) atGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCGTCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTCTTATCCca > 1:587318/1‑149 (MQ=255) tGCCCGGATCTTGTAAATAGCGCAGCAGAAGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTCTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCcac > 1:760003/1‑149 (MQ=255) cGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCCGTACTCTTCGTCCCCGTTTTTATCCCACAgcg > 2:1141659/1‑149 (MQ=255) ggATCTTGTAAATAGCGCAGCAGACTCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTCAGCCGTCAGGCAGTACTCTTCGTCACCGTTTTTATCCCACAgcgc > 1:693294/1‑149 (MQ=255) tctgcgaatttgcgcAGCAGACGCTCATTCCCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCGTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCaaa < 1:410419/138‑1 (MQ=255) ccTTGTAAACAGCGCAGCAGTCGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCGGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCaaa < 1:1005412/148‑1 (MQ=255) ttGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCATGTTCGCCTGCGCGGACCAGGAAATCGATCACGTAAGCCGCCAGCCAGTACTCTACGGCACCGGGTTGATCCCACAGCGCACAgc > 2:107965/1‑149 (MQ=255) tGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAACTCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGCTTTTATCCCACAGCGCAAAgcc > 2:827062/1‑149 (MQ=255) gTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGAGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAgccg > 1:170194/1‑149 (MQ=255) tAAATAGCGCAGCAGATGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCCGTAAACCTGTTCGACTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTAGTCTTCGTCACCGGTTTTATCACACACCGCACAgcggc > 2:873836/1‑149 (MQ=255) cgcAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGACTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCGGACAGTACTCTTCGTCACCGTTTTTATCCCACAACGCAAGACCGCCGGTAtg > 1:505244/1‑148 (MQ=255) gcggcagCCGCTCATTACCCCGGTTCATG‑CGGTCTGGACGCACGCTGTAACCCTGTTCCCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCa < 1:1067403/146‑1 (MQ=255) gACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCACGTTGc > 2:760912/1‑149 (MQ=255) gtcccccGGTTACCG‑GCGTCCGTCGGCAGCCTGTACCCCTGTTCGTCTGCGCCGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCACGTTGCATTTgcag < 1:174767/146‑1 (MQ=255) cGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGAACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCACGTTGCATTTGCAGCAAACg > 2:1046201/1‑149 (MQ=255) gTTGATG‑GCGTCTGTCGGCACGCTGTAGCCCTGTGCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCACGTTGCATTTGCAGCAAACggg < 1:360993/149‑1 (MQ=255) ttAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCACGTTGCATTTGCAGCAAACGGGa > 2:549209/1‑149 (MQ=255) | ACCCAGCGGAGCCTTTTGCTGACGGGCCAACACCAGCGCAGCGTAAGACTGTACGGCGAATTTACTGGCTTTGAGATTATCCGCGTACGGGATCGACATCATGCCCGGATCTTGTAAATAGCGCAGCAGACGCTCATTACCCCGGTTAATG‑GCGTCTGTCGGCACGCTGTAACCCTGTTCGCCTGCGCGGACCAGGAAATCCATCACGTAAGCCGTCAGCCAGTACTCTTCGTCACCGTTTTTATCCCACAGCGCAAAGCCGCCGTTATCACGTTGCATTTGCAGCAAACGGGA > CP009273/2641672‑2641965 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |