| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,911,659 | A→G | 6.7% | intergenic (‑34/+17) | atpG ← / ← atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,911,659 | 0 | A | G | 6.7% | 238.9 / 8.0 | 90 | intergenic (‑34/+17) | atpG/atpA | F1 sector of membrane‑bound ATP synthase, gamma subunit/F1 sector of membrane‑bound ATP synthase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base A (46/38); new base G (3/3); total (49/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.21e-02 | |||||||||||
TGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGACGTAAGCCAG > CP009273/3911511‑3911804 | tGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGCCCCGTTCCATTGCGTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTaa < 1:648345/149‑1 (MQ=255)tGCGATCCTGAGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GCATCTTGCGATCTTAATACGGATCTCTTTTGCGCAGGCCATGAGCTATTCCTCAATGCATTCAGTCCTGGCCTaa > 2:910840/1‑149 (MQ=255) gCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTTCGGCCTGCCCTAAg > 1:317670/1‑149 (MQ=255) gCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTCAg > 2:666359/1‑149 (MQ=255) gATCCTGCGATTTACGCATTTTGAAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTATTACGTATCTCTTATGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGc > 2:849857/1‑149 (MQ=255) tGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGAGCTTTTGAGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAgcc > 2:806432/1‑149 (MQ=255) gCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCTTGCCTTAGGGCAGgccg < 1:857556/149‑1 (MQ=255) aTTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCTTGCCTTAGGGCAGgccgcaa < 1:1117476/149‑3 (MQ=255) aTTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCa > 1:1235731/1‑149 (MQ=255) tttACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCTTGCCTTAGGGCAGGCCGCAAg < 2:131668/149‑1 (MQ=255) tttACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGAAAACCGCCAg > 1:1170274/1‑149 (MQ=255) cATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTCCGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCGGCCCTAAGGCAGGCCGCCAgcgctta > 1:670448/1‑143 (MQ=255) tttGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCGTAAGGCAAGCCGCCAGACGTTACCa < 1:622186/149‑1 (MQ=255) ttGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAg > 1:271477/1‑149 (MQ=255) gcggcgACCATCTCCATCGCTTTAGTGGTCTTTTGCGTGTTCAG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTgg < 2:1163036/149‑1 (MQ=255) gcggcgACCATCTCCAGCGCCTTAGTGACCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTgg < 1:267438/149‑1 (MQ=255) cggcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTATC‑GGCGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCCGACGTTACCAGGATTggg > 1:177335/1‑149 (MQ=255) gcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGCTCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGtt > 1:169699/1‑149 (MQ=255) gcgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGtt > 1:974439/1‑149 (MQ=255) gcgACCATCTCCATCGCTTTAGTGAGCTTTAGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGtt > 1:640783/1‑149 (MQ=255) cgACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTg < 1:1114199/149‑1 (MQ=255) atgtgcATCGCTTTAGTGTTCTTTTGCGTGTTCTG‑TACGCTTGCGATCTTACTACGTATCTCTTTGGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGGGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTg < 2:986480/144‑1 (MQ=255) tctcCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGa < 2:825623/149‑1 (MQ=255) tcccATCTCTGTAGTTTTCTTTTGCCGGTTCTT‑GACGCTTGCGATCTAACTACGTATCTCTTTTGCGCCGTCCATGCGCTTCTCCTCGATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGaa < 2:63394/147‑1 (MQ=255) ctctATCGCCTTAGCGATGTGTTGGCTGGTCTT‑GACGCTTGCGATCTTACTACGTTTCTTCTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCGTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGaa < 2:549082/149‑1 (MQ=255) tcCATCGCTTTAGTGCTCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGAATTGGGTTGCTTTGAAg > 2:143806/1‑149 (MQ=255) tcCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAg > 1:211235/1‑149 (MQ=255) tcCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAACCCGCCAGACGTTACCAGGCTTGGGTTGCTTTGAAg > 2:498956/1‑149 (MQ=255) ccATCGCTTTAGTGATCTTTTGCGAGTTATG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATTAGATTCTGCGCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAgg > 1:926594/1‑149 (MQ=255) cATCGCTTTAGTGATCTTTTGCGTGAAATGAGAAG‑TTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGa > 1:1226397/1‑149 (MQ=255) cTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAAttgg > 1:167340/1‑146 (MQ=255) cTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGa < 1:857455/149‑1 (MQ=255) tcgTGATCTTTTGCGTGTTATG‑GACGCTTGCGATCTTACTACGTGTCTCTTTTGCGCCGGCCGTGAGCTTCTCCTCAATGCCTTGCGGCGTGCGCTAAGGCAAGGCGCCAGACGTTGCCAGGGTTGGGTTGCTTTGAAGTGATCGAGGa > 2:212281/3‑149 (MQ=255) tAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTCAGGCAAGCCGCCACACGTTACCAGGCTTGGGTTGCTTTGAAGGACACGAGGa > 2:469569/1‑149 (MQ=255) tAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAggg > 2:1131692/1‑148 (MQ=255) taTCTTTTGCCGTTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGcc < 2:57171/148‑1 (MQ=255) aTCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGTGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTACCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCt > 1:837474/1‑149 (MQ=255) aTCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCt > 1:74014/1‑149 (MQ=255) aTCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGGATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCt > 1:728615/1‑149 (MQ=255) tttGCGTGTTCTG‑CACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCCCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCa < 1:26151/149‑1 (MQ=255) cGTTTTCTG‑GACGCTTGCGATCTTACTACGTATCCCTTGTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTAAAAAAAAACGAAGGAATCGAGGATGCCTTTCAGCtt < 2:269117/149‑1 (MQ=255) cGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCtt > 1:929730/1‑149 (MQ=255) tgtTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGc < 1:767330/149‑1 (MQ=255) cgg‑gACGCTTGCGTTTTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTc < 1:1028478/147‑1 (MQ=255) gACGCTTGCGATCTTATTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCTTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGAt < 1:8335/149‑1 (MQ=255) tcTTTCGATTTTATTCCGTTTTTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATCCCTTGCGGCCTGCCCTAAGTTAAGCTGTCACACGTTACCATGATTGCGTTGCTTTGAAGGAATCGAGTATTCCTTTCAGCTTGCCTTCGATTtc < 2:666203/148‑1 (MQ=255) gCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTtc < 2:395690/149‑1 (MQ=255) cTTGCGATCTTACTACGTACCTCTTTTGCGCCGGCCATGATCTTCTCCCCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTTGATTtcg < 2:842314/149‑1 (MQ=255) tcGACCTTACTACGTATCTCCTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTGCAGCTTGCCTTCGATTtcgtcg < 2:167396/148‑1 (MQ=255) gCGATCTTACTACGTATCTCTTTTGCGGCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCGAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCATTTCAGCTTGCCTTCGATTtcgtcg < 1:619695/149‑1 (MQ=255) gCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTtcgtcg < 1:1006427/149‑1 (MQ=255) gCGATCTTACTACGTATCTCTGTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTtcgtcg < 1:505105/149‑1 (MQ=255) cGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTcgtcgt < 1:79844/149‑1 (MQ=255) cGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTcgtcgt < 1:112521/149‑1 (MQ=255) aTCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCGCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGGTTGCCTTCGATTTCGTCGTTg > 2:266813/1‑149 (MQ=255) ttACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGGCGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGtgg > 2:133178/1‑147 (MQ=255) ttACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAg > 1:461820/1‑149 (MQ=255) ctacGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCa < 2:974439/149‑1 (MQ=255) cGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCg < 1:926815/149‑1 (MQ=255) tctTTTGCGCCGGCCATGAGCTTCTCCGCAAGGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTgg < 1:205955/149‑1 (MQ=255) ttttGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGtt > 1:584570/1‑149 (MQ=255) ttttGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGtt > 2:771461/1‑149 (MQ=255) ttttGCGCCGGCCATGAGCTTCACCTCAATGACTTGCGGCCTGCACTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGCAGGAATCGAGGCAGCCGTTCCGCTTGCCTTCGATTTCGGCGTGGTAGCCACCGGGCTGGtg > 2:929729/1‑148 (MQ=255) tttGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCCGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGGTTGCCTTCGATTTCGTCGTTGTAGCCACCGGGCTGGTTg > 1:373723/1‑149 (MQ=255) ttGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGa > 1:217633/1‑149 (MQ=255) tGCGCCCGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGAt < 2:493981/149‑1 (MQ=255) gcCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCAGCGGGCCGGTTGAtctc > 1:188006/1‑149 (MQ=255) cGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAGGCCGCCAGACGTTACCGGGGTTGGGCTGCTTTGAAGGAATCGAGGAGGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCCCCGGTCTGCTTGATCTCtt > 2:949954/1‑149 (MQ=255) tcATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCa < 1:178740/148‑1 (MQ=255) ccctGAGCTTCCTCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTCGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCa < 1:254071/146‑1 (MQ=255) tGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAAGACGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTAATCTCTTGCATCa > 1:239258/1‑149 (MQ=255) tGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATGGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCCCTTGCATCa > 2:28230/1‑149 (MQ=255) aacTTCGCCGCAATGCCTTGCGGCCGGCCGTAAGGGCAGCCGCCAGACGTTACGAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTCTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGGTGATCTCTTGCATCAAc < 2:916400/147‑1 (MQ=255) ctcctcAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGc < 2:584570/149‑1 (MQ=255) ctcAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTTATCTCTTGCATCAACGGAGCGTg > 1:1105266/1‑149 (MQ=255) tcAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTCGTAACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGa > 1:1152506/1‑149 (MQ=255) aaTGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCGTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATc < 1:824019/149‑1 (MQ=255) gCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCAACGGTCTGGGTGATCTCTTGCGTCAACGGAGCGTGATCACg > 1:679464/1‑149 (MQ=255) ccTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGGCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGACAACgg > 2:922953/1‑149 (MQ=255) ccTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAAACGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGCTCTCTTGCATCAACgggcagtgagaccgg > 1:834615/1‑136 (MQ=255) cTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGt < 2:1226397/149‑1 (MQ=255) cTTGCGGCCTGCCCTAAGGCAAGCCGCCACACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGt < 2:271477/149‑1 (MQ=255) ggCGGCTTGCCTTAGGGCAGGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCg > 1:1142785/2‑149 (MQ=255) gCGGCTTGCCTTAGGGCAGGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGAGCACGGTCGa > 1:98212/1‑149 (MQ=255) cGGCTTGCCTTAGGGCAGGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGCTCACGGTCGAc > 2:629972/1‑149 (MQ=255) cGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGAc < 2:24142/149‑1 (MQ=255) ggccggccCTAAGGCAAGCCGCCAGACGTTACCAGGATGGGGTAGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTGGCCACCGGTCTGGTTGATCTCTTGCTTCAACGGAGCGTGATCACGGTCGACg < 2:641892/149‑1 (MQ=255) ggCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGACg > 2:584223/1‑149 (MQ=255) cTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGTATCAACGGAGCGTGATCACGGTCGACGTAAGCcag < 2:772474/149‑1 (MQ=255) cTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGCCGTAAGCcag > 1:1067033/1‑149 (MQ=255) cTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGACGACGTAAGCcag > 1:519408/1‑149 (MQ=255) cTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTGCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGGCGTAAGCcag > 1:1183071/1‑149 (MQ=255) | TGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTTAGTGATCTTTTGCGTGTTCTG‑GACGCTTGCGATCTTACTACGTATCTCTTTTGCGCCGGCCATGAGCTTCTCCTCAATGCCTTGCGGCCTGCCCTAAGGCAAGCCGCCAGACGTTACCAGGATTGGGTTGCTTTGAAGGAATCGAGGATGCCTTTCAGCTTGCCTTCGATTTCGTCGTTGTAGCCACCGGTCTGGTTGATCTCTTGCATCAACGGAGCGTGATCACGGTCGACGTAAGCCAG > CP009273/3911511‑3911804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |