| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1828864 = | 157 (0.940) | 11 (0.070) | 10/412 | 10.7 | 6.9% | coding (871/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | NC_000913 | 1828903 = | 146 (0.910) | coding (832/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CAGGCGCTGAGTGCGCTGGAGGATCTCGACGGTTTGCTGTTTACCGGTAGCGCCAATACAGGCTACCAGTTGCATCGCCAGCTCTCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1829122‑1828864‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCCACCTCATCGATAATTAGCGGATTATTACCGCCCATCTCAAGGGCGAGAATTTTCTCCGGCTGACCGGAGAGCTGGCGATGCAACTGGTAGCCTGTATTGGCGCTACCGGTAAACAGCAAACCGTCGAGATCCTCCAGCGCACTCAGCGCCTGACCCGTTTCACGCCCGCCCTGCACCAG > NC_000913/1828903‑1829149 nggggGCTGGGTGCGCTGGAGGATCTCGACGGTTTGCTGTTTACCGGTAGCGCCAAGACAGGCTACCAGTTGCATCGCCAGCTCTCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGG < 1:1121028/246‑1CAGGCGCTGAGTGCGCTGGAGGATCTCGACGGTTTGCTGTTTACCGGTAGCGCCAATACAGGCTACCAGTTGCATCGCCAGCTCTCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCACGCCGTTTATTGCTGAAAAGCGG > 2:662389/1‑251 agggcCTGGGTGCGCGGGGGGATCTGGACTGTTGGCTGTTTACCGGTACGGCCAAACCAGGCTACCAGTTGCAGCGCCAGCTCTCCGGTCAGCCGGGGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGGGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGG < 1:662329/246‑1 AGGCGCTGTGTGCGCTGGAGGATCTGGACGGTTTGCGGTTTACCGGGAGCGCCAATACAGGCTACCAGGTGCATCGCCAGCTCTCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAAGAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGG < 1:803374/251‑1 GCTGAGTGCGCTGGAGGATCTCGACGGTTTGCTGTTTACCGGTAGCGCCAATACAGGCTACCAGTTGCATCGCCAGCTCTCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCCCCGCCGGCCCACGCCGCACCTGCCCCCGCCGTTTAGTGCTGAAAAACGGGGgcc > 1:1625786/1‑248 GTGCGCTGGACGATCTCGACGGTTTGCTGTTTACCGGTAGCGCCGGTACAGGCTACCAGTTGCATCCCCAGCGCTCCGGTCAGCCGGAGAACATTCACGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGACGTTTGTCACAGCCGGTCAACGCTGCACCTGCTCCCGCCGTCTCTTGCTGCAAAGCGGGtgtccgggc > 1:917545/1‑242 CTACCAGTTGCATCGCCAGCTCTCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGCAGCGTTGACCGGCTGTGACA > 2:1783386/1‑220 TCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGC > 1:579421/1‑178 TTCTCGCCCGTGGGATGGGCGGTAATAATCCGC‑TAATTATCGGTGTGGTG‑TCGGCTGTCGACGCGGCTGTCCGTCTGGCCATTCAGTCGTCTTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGACGTTTATTGCTGAAAAGCGGGGCGCAAGTGCAGCGTTGACCGGCTGTGACAAA < 1:786732/181‑1 GGCGGTAGTCATCCGCGTAAGT‑TCGATG‑GGTGCGCGGATAGCGATGCGGCTGACCATCTGACAAATCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGAAGGTGCAGCGTTGTCCGGCTGTG < 1:1449377/159‑1 GTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGCAGCGTTGACCGGC < 2:1122308/151‑1 CGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGCAGCGTTGACC > 1:669388/1‑139 CGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGCAGCG > 1:255392/1‑133 GC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGCAGCGTTGACCGGCTGTGAC < 2:1727179/147‑1 GATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGATTGTCACAGCCGGACAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAACCGGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCTACTGAATGGTCAGA > 2:1449520/1‑159 AGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGT > 1:1122216/1‑151 TATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCCGATG > 1:1727008/1‑147 GGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCCACCTCATCGATAATTAGCGGATTATTACCGCCCATCTCAAGGGCGAGAATTTTCTCCGGCTGACCGGAGAGCTGGCGATGCAACTGGTAGCCTGTATTGGCGCTACCGGTAAACAGCAAACCGTCGAGATCCTCCAGCGCACTCAGCGCCTGACCCGTTTCACGCCCGCCCTGC < 2:793695/251‑1 CAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCCACCTCATCGATAATTAGCGGATTATTACCGCCCATCTCAAGGGCGAGAATTTTCTCCGGCTGACCGGAGAGCTGGCGATGCAACTGGTAGCCTGTATTGGCGCTACCGGTAAACAGCAAACCGTCGAGATCCTCCAGCGCACTCAGCGCCTGACCCGTTTCACGCCCGCCCTGCACCAG > 2:530058/1‑251 CAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCCACCTCATCGATAATTAGCGGATTATTACCGCCCATCTCAAGGGCGAGAATTTTCTCCGGCTGACCGGAGAGCTGGCGATGCAACTGGTAGCCTGTATTGGCGCTACCGGTAAACAGCAAACCGTCGAGATCCTCCAGCGCAC > 2:345220/1‑214 GGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCCACCTCATC < 2:1305269/78‑1 GTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCCACCTCATC < 2:833828/77‑1 CAGGCGCTGAGTGCGCTGGAGGATCTCGACGGTTTGCTGTTTACCGGTAGCGCCAATACAGGCTACCAGTTGCATCGCCAGCTCTCCGGTCAGCCGGAGAAAATTCTCGCCCTTGAGATGGGCGGTAATAATCCGC‑TAATTATCGATGAGGTG‑GCGGATATCGACGCGGCTGTCCATCTGACCATTCAGTCGGCGTTTGTCACAGCCGGTCAACGCTGCACCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1829122‑1828864‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgcaggTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTCGATATCCGCCACCTCATCGATAATTAGCGGATTATTACCGCCCATCTCAAGGGCGAGAATTTTCTCCGGCTGACCGGAGAGCTGGCGATGCAACTGGTAGCCTGTATTGGCGCTACCGGTAAACAGCAAACCGTCGAGATCCTCCAGCGCACTCAGCGCCTGACCCGTTTCACGCCCGCCCTGCACCAG > NC_000913/1828903‑1829149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |