| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4443942 | 138 (1.370) | 3 (0.030) | 3/250 | NT | 2.2% | coding (1561/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit |
| ? | NC_000913 | = 4443976 | 130 (1.330) | coding (1595/1734 nt) | tamA | translocation and assembly module for autotransporter export, outer membrane subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGGGGCGACCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4443792‑4443942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCACGTTGTACTGGTATTCCAGCGATCCGGTTATCAACTTCGAGGCCCCTTTCAGGTCACCGTTGGCGTATTTCGGAGCGATA < NC_000913/4443976‑4443830 GGGGGCGACCTCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGT < 7:51767/149‑1GGGGGCGACCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGT < 4:237123/149‑1 GGGGCGACCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGTC < 8:66084/149‑1 CAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGT > 5:279331/1‑117 CAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGT < 6:279331/117‑1 CGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACA < 1:222816/148‑1 GAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAA < 5:146291/145‑1 GAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGTCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAA > 6:146291/1‑145 TCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCACGTTGTACTGGTATTCCAGCGATCCGGTTATCAACTTCGAGGCCCCTTTCAGGTCACCGTTGGCGTATTTCGGAGCGAT < 8:215925/149‑1 TCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCACGTTGTACTGGTATTCCAGCGATCCGGTTATCAACTTCGAGGCCCCTTTCAGGTCACCGTTGGCGTATTTCGGAGCGA > 5:238795/1‑148 TCGCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCACGTTGTACTGGTATTCCAGCGATCCGGTTATCAACTTCGAGGCCCCTTTCAGGTCACCGTTGGCATATTTCGGAGCGA > 3:180227/1‑148 GCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCACGTTGTACTGGTATTCCAGCGATCCGGTTATCAACTTCGAGGCCCCTTTCAGGTCACCGTTGGCGTATTTCGGAGCGATA < 7:127628/148‑1 GGGGGCGACCGCAGTATTCGTGGCTACAAATACAAATCTATCGCTCCGAAATACGCCAACGGTGACCTGAAAGGGGCCTCGAAGTTGATAACCGGATCGCTGGAATACCAGTACAACGTGACCGGAAAATGGTGGGGCGCGGTGTTTGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4443792‑4443942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgCTGCGGCGAATATCGCTTACCGCTTCGCCACTATCGACAAACACCGCGCCCCACCATTTTCCGGTCACGTTGTACTGGTATTCCAGCGATCCGGTTATCAACTTCGAGGCCCCTTTCAGGTCACCGTTGGCGTATTTCGGAGCGATA < NC_000913/4443976‑4443830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |