New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3915903	41 (0.870)	3 (0.060)	3/280	7.2	6.4%	coding (70/420 nt)	atpC	F1 sector of membrane‑bound ATP synthase, epsilon subunit
	?	NC_000913	= 3915925	47 (1.010)					coding (48/420 nt)	atpC	F1 sector of membrane‑bound ATP synthase, epsilon subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3915761‑3915903 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGTTCTCTGGTCTGGTCGAGAAAATCCAGGTAACGGGTAGCGAAGGTGAACTGGG  <  NC_000913/3915925‑3915872                                                                                                                                                                                                       TCAAGACTGCCGCCATACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAACCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAT                                                        <  2:107852/143‑1   AAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTAGCTACCCGTTACCTCGATGT                                                      >  2:707669/1‑143                                       ACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATGTTCTCTGGTCTGGTCGAGAAAATCCAGGTAACGGGTA                  >  2:341082/1‑143                                                       ATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGATGTTCTCTGGTCTGGTCGAGAAAATCCAGGTAACGGGTAGCGAAGGTGAACTGGG  <  1:341082/143‑1                                                                                                                                                                                                       TCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCAGTTCACCTTCGCTACCCGTTACCTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3915761‑3915903 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atGTTCTCTGGTCTGGTCGAGAAAATCCAGGTAACGGGTAGCGAAGGTGAACTGGG  <  NC_000913/3915925‑3915872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.