| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3360041 = | 44 (0.800) | 3 (0.060) | 3/488 | 5.9 | 6.6% | coding (844/1419 nt) | gltD | glutamate synthase, 4Fe‑4S protein, small subunit |
| ? | NC_000913 | 3360672 = | NA (NA) | intergenic (+56/‑504) | gltD/gltF | glutamate synthase, 4Fe‑4S protein, small subunit/periplasmic protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCGGCTGGACGTTGAATTTGAACTCTACGCCTTCTTCCCGCGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTTCCATGCTGACGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3360315‑3360041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacgaaGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTT > NC_000913/3360672‑3360735 TCCGGTTCGCCCATTTCCGTGCGCACCATTTGTCCCCCGCTGACTGTCCCGTTACCGTTCACTTCAATACCCAGCGGCTGGACGTTGAATTTGACCTCTACGCCTTCTTCCCGCGCGTTTTGCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTTCCATGCTGACGA < 1:199486/274‑1 CGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCGGCTGGACGTTGAATTTGAACTCTACGCCTTCTTCCCGCGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTCCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCACAGGCCCACCAAGCGTTACCCTTCCATGCTGACGAAGg > 1:420433/1‑274 TGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTTCCATGCTGACGAAGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATA > 1:278320/1‑190 CTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTTCCATGCTGACGAAGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTT < 2:278319/190‑1 TCCGGTTCGCCCATTTCGGTACGCACCATTTTTACGCCGCTGACTTTGCCGTTACCGTTCACTTCAATACCCAGCGGCTGGACGTTGAATTTGAACTCTACGCCTTCTTCCCGCGCGTTTTTCACTTCGCGGCGGGAACCCGGCATGTTCTCTTCATCACGACGATAGGCACAGGTAACGTGCTTCGCTCCCTGGCGCACGGACGTACGCACGCAGTCCATCGCAGTGTCGCCACCGCCAAGGACCACCACGCGTTTGCCTTCCATGCTGACGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3360315‑3360041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacgaaGTGCGCGTTGTTTTCTGGCAAATGCGGCATGAGCGTTTGACCTTTCCTATAATAGGGATAATTT > NC_000913/3360672‑3360735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |