New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1979489	0 (0.000)	66 (1.080)	44/418	NT	100%	intergenic (‑274/‑264)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	= 2290111	NA (NA)					intergenic (‑32/+1)	insH1/yejO	IS5 transposase and trans‑activator/pseudogene, autotransporter outer membrane homology,putative transport, Not classified, putative ATP‑binding component of a transport system

GCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATG  >  NC_000913/2289887‑2290335                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                 gCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGCTGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTTTTTGACC‑CTTCCATaa                                                                                                                                                                                                                              >  1:134196/1‑229 (MQ=9)   cGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAAc                                                                                                                                                                                                                             >  1:64078/1‑228 (MQ=31)        attcacAGCTTTGGGGTTAACAGGCTCGATGACTTCCACCATGTTTTGCAAGGGCAGTACCTGCTCCAGGCAGGACAAGAAAATCTCTTTGCTGGTCTGACGGCGCTTACTGCTGAATTTACTGTCGGCGCAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCACATATCAGGGACTTGTTCGCAA‑CTTCCATAATGCTGTa                                                                                                                                                                                                                       <  2:573688/224‑1 (MQ=11)         ttacccagctgggggTTAAACGGCTCGCTGACTTCCACCGTGTTTTGCCAAGGCAGAATCTGCTCCAGGCGGAACAAGATAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCTCTGTCGGCGAAGTTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTa                                                                                                                                                                                                                       <  2:179338/217‑1 (MQ=11)                ccTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAAGGCTGTAGCCACCAg                                                                                                                                                                                                               >  1:159348/1‑229 (MQ=37)                   tGGGGTAAAACGGCCTCATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAAc                                                                                                                                                                                                            <  1:430772/229‑1 (MQ=255)                    ggggTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGAAAAACATGATCTCATATCAGGGACTTGTTCGGCC‑CTTCCATAAAACAGTAGCCACCAGAACa                                                                                                                                                                                                           >  2:312590/1‑229 (MQ=255)                      ggTAAACCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGa                                                                                                                                                                                                         <  1:588117/229‑1 (MQ=255)                          aaaCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATTTCATATCAGGGACTTGTTCGCAC‑CTTCCAAAAAGCTGAAGCCACCAGAAAAGAAAtt                                                                                                                                                                                                     >  1:42258/1‑229 (MQ=255)                           aacgtgtcgggggcTTCCTACATGTTTTGCCTTGGCAGAACCTGCTCCATGCGGGACAAGAAAAGCTCTTTTCTGGTCTGACGGCGCTTACCGCTGGATTCACTGTCGTCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTGCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTg                                                                                                                                                                                                    <  2:64078/216‑1 (MQ=14)                             cGGCTCGATGACTTCCACAGTGTTTTGCCATGGCAGGATCTGCACCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCg                                                                                                                                                                                                  <  1:574844/229‑1 (MQ=255)                                cTCGATGACTTCCACCCTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGCTCTAT‑GGCTCCAGATGAACAAAATAGACTCATATCAGGGACTTGTTAGCAC‑CTTCCATAACCATGTATCCCCCCCAACAGACATTGCggta                                                                                                                                                                                               >  2:574843/1‑227 (MQ=11)                                cTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGATGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCTGATAACAAACATGATTTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTTCgggc                                                                                                                                                                                               >  1:462789/1‑227 (MQ=255)                                     ttgcttcccacttGTTTTGCCATGGGAAAATCGTGTCCAAGCGGGACAAGAAAATCCCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACa                                                                                                                                                                                          <  2:23510/217‑1 (MQ=17)                                     gtgctcccaccaTGTTTTGCCATGGGAAAATCTGCTACATGCTGGACAAACAAATCTCTTTTCTGGTCTGACGGCGCTTACTTCTGAATTCTCTGTCGGCGAAGGTAAGGTGATGACGCATGATGACCCCTTTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTTTTCGCTC‑CTTCCATAACGCTGTAGCCACCAGAACTGACACTACGGAACGACa                                                                                                                                                                                          <  2:525308/223‑1 (MQ=14)                                             cccaTGTTTTGCCATTGCAGAATCTCCCCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                                                                                                  <  2:125845/228‑1 (MQ=255)                                              ccaTGGTTTGCCACGGCCGAATTGGCCCCAAGGGGGAAAAGAAAATCGCATCTCTGGTCTGAGGGGGCTTAGTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATACCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCGCCAGAACAGATATTGCGGAACGACAAAGAGAAAc                                                                                                                                                                                 <  2:424466/229‑1 (MQ=17)                                                 tGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTTTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGAAATTTCGGAACGACAAAGAGAAACaaa                                                                                                                                                                              >  2:443618/1‑227 (MQ=255)                                                          atggcaaaagttgtcccagtcGGGAAAAGAAAATCGCTGTTCGGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGGGAAGGTAAGTTGATGACTCATGATGAAACCTGTTGTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTg                                                                                                                                                                     <  2:368999/209‑1 (MQ=18)                                                                gaaccgggctcATGCGGGACAAGAAAATCTCTTTGCGTGTCTTACGGCGCTTCCTGCTGAATTCCCGGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCAt                                                                                                                                                               <  1:651295/219‑1 (MQ=18)                                                                  aTCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCCCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTg                                                                                                                                                             <  1:122643/229‑1 (MQ=255)                                                                  aTCTGCCCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGGTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATTATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTg                                                                                                                                                             <  1:652277/229‑1 (MQ=255)                                                                  aTCTGCCCCATGCGGGAAAAAAAAATCTCTTTGCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGGTAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTg                                                                                                                                                             <  2:475353/229‑1 (MQ=255)                                                                        tCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACAAGATTGATCCATTGAGCttt                                                                                                                                                       >  1:398876/1‑229 (MQ=255)                                                                            tGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                                                                                                  >  2:315235/1‑198 (MQ=255)                                                                            tGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGaaa                                                                                                                                                                                  <  1:315235/198‑1 (MQ=255)                                                                                      gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATTTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAACCACCAGAACAGAGATTGCGGAACGCCAAAAAAAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaata                                                                                                                                         >  2:491491/1‑228 (MQ=255)                                                                                      gAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCATGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACCGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaatt                                                                                                                                         >  1:459999/1‑229 (MQ=255)                                                                                            ctctTTTCTTGTCTGACGGCGCTTACTGCGGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                                                                                                    <  1:324861/228‑1 (MQ=255)                                                                                            cgtttttCTTGTCGTACGTCGTTTTCTGCTGAATTCACTGTCGGAGAAGGGAACTTGATGACTCATGATGAACCCTGTTCTAG‑GGCTCCAGATGACAACCATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCAACAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                                                                                                    <  2:404123/225‑1 (MQ=25)                                                                                            ccctTTTCCGGTTTGAAGGCCATTACTGCTGAATTCCATGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATAACAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTg                                                                                                                                    <  1:676637/226‑1 (MQ=25)                                                                                                  tctggttgtaacgcgcTTACCTCTGAATTCATTGGCGGCGAAGGTAAGGTGATGTCTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                                                                                                                             <  1:312590/217‑1 (MQ=25)                                                                                                    tGGTCTGACTGCGCTTATTGATTAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa                                                                                                                           <  2:534965/229‑1 (MQ=255)                                                                                                       tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa                                                                                                                        <  2:216303/229‑1 (MQ=255)                                                                                                       tCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGGTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa                                                                                                                        <  1:77589/229‑1 (MQ=255)                                                                                                         ttgacgccgtttcttgtgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt                                                                                                                      <  2:683120/213‑1 (MQ=255)                                                                                                           aCGGCGCTTACTGCTGAATTCACTGTCCGCGAAGGTAAGTTGCTGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGAATTTAACTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg                                                                                                                    >  1:377675/1‑229 (MQ=255)                                                                                                                      tgctgAATTCACTGTCGGCGAAGTTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGACCTCATATCAGGGACTTGTGCGCAC‑CTTCCATAACGCTGTAGCAACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaaaa                                                                                                          <  2:377758/228‑1 (MQ=255)                                                                                                                        ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATAc                                                                                                       >  1:529892/1‑229 (MQ=255)                                                                                                                            aTTCTCTGTGGGGGAAGGTAAGTTAATGACTCATGATGAACCCTGTTCTAT‑GGCCCCAGATGACAAACATGATCTCATATCAGGTACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCa                                                                                                    <  2:648881/228‑1 (MQ=255)                                                                                                                            aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCAt                                                                                                   <  1:3813/229‑1 (MQ=255)                                                                                                                                   ggcGGCGAAGGTAAGTTGATGACTCAAGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa                                                                                            <  1:620894/227‑1 (MQ=255)                                                                                                                                       gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATAc                                                                                         >  1:639946/1‑229 (MQ=255)                                                                                                                                                aGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAg                                                                               >  1:155429/1‑229 (MQ=255)                                                                                                                                                       gaCTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCCTTGAGCTTTCATCCTAAGAAATTAATTGCTGTTAAAAGCACTGGGTACAGAAAATCCCCATAGCTCCAAACCCGGATGCATGTTTTaa                                                                        >  2:462057/1‑229 (MQ=38)                                                                                                                                                         ttCATTATTAACCCTCTTCTAT‑GCGTCCAGAGGAAAAATATGAACCCATACACGGGCCTTGGTCTCCC‑TTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTaaa                                                                       <  2:658381/227‑1 (MQ=255)                                                                                                                                                          tCATGATGACCCTTGTTTTAT‑TGCCCCCGATGACAAACATGATCTCATATCAGGGACTTGTTCGAAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTaaaaa                                                                     <  2:756345/229‑1 (MQ=255)                                                                                                                                                           cacggtggaCCCTGTTCTATGGGCTCCAGATTGAAAACATGATCCTATATCAGGGACTTGGTCGCAC‑CGTCCAAAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTaaaaa                                                                     <  2:639945/221‑1 (MQ=255)                                                                                                                                                                 gaACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTa                                                              <  1:411592/229‑1 (MQ=255)                                                                                                                                                                 gaACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTa                                                              <  1:443618/229‑1 (MQ=255)                                                                                                                                                                  taagccttttttatgctcccAGGTGACAAACAGGATCGCATATGAGGGAGTTGTTC‑CACACGTGCATAACTCTGTAGCACCCAGAACATATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCATTCATACTATGTAATTAATTGCTGTTAAAATCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTa                                                              <  2:553216/211‑1 (MQ=255)                                                                                                                                                                    cccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGTGACAGAAAATACCCATAGCTCCATACCCGGGGTCAGTTTTTAAAAACTGTTTAAAg                                                           >  1:561097/1‑229 (MQ=255)                                                                                                                                                                    cccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCCTGGCTCCATACCCGGGGTCAGTTTTTAAAAACTGTTTAAAg                                                           >  1:454331/1‑229 (MQ=255)                                                                                                                                                                    cccTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTAATCCTATGAAATTAATTGCTGTTACAAGCATTGGGTACAGAAAATACCCTGAGCTCCATACCCGGGGTAAGTTTTTAAAACATGTTTaacg                                                           >  1:756346/1‑227 (MQ=38)                                                                                                                                                                            ttt‑GGCTTCAGATTATAAACTTGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACCCTGGAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACAAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGcac                                                   <  2:134196/227‑1 (MQ=255)                                                                                                                                                                            tAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTTAGCTTTCATCCTATGAAATTAATTGATGTTAAAAGCATTGGGCACAGAAAATACCCAAAGCTCCATACCCGAAGTCACTTTTTAAAAACGTTTTAAACAAAtacca                                                   >  2:358731/1‑225 (MQ=39)                                                                                                                                                                            tAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATgaaa                                                   >  2:575299/1‑226 (MQ=255)                                                                                                                                                                            tAT‑GGCCCCAAATTGCAAACATGATCCCAAAACCGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCAGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGcac                                                   <  2:491509/229‑1 (MQ=255)                                                                                                                                                                              t‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGCTGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTCCAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAACCTGTTCAAAAAAATgacaaa                                                 >  2:53795/1‑224 (MQ=255)                                                                                                                                                                                    ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTAtt                                            >  1:88841/1‑229 (MQ=255)                                                                                                                                                                                    ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGAAtt                                            >  1:204652/1‑229 (MQ=255)                                                                                                                                                                                    ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGAACAAGAAtt                                            >  1:299133/1‑229 (MQ=255)                                                                                                                                                                                                           atCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAACGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTCCAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGAACACGTATTGTGATTGATTTTTTAGTTGtttt                     >  1:432559/1‑229 (MQ=255)                                                                                                                                                                                                           atCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGCAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGTAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACTCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCCCAAGTATTGTGATTGATTTTTTAGTTGtttt                     >  1:579582/1‑229 (MQ=255)                                                                                                                                                                                                               gggACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGAATGGTGATTGATTTTTTAGTTGtttttttt                 >  2:268788/1‑229 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGGAACAGAATCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGTAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTTAGGTGGATTTTTTAGTTGTTTTTCTtg                >  2:636930/1‑229 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa                                                                                            >  1:710996/1‑153 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCa                                                                                            <  2:710995/153‑1 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCCCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtg                >  1:496221/1‑229 (MQ=255)                                                                                                                                                                                                                ggACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTtg                >  1:725525/1‑229 (MQ=255)                                                                                                                                                                                                                   cTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTCAAGAAATGCACACGTATTGGGATTGATTTTTTAGTTGTTTTTTTtgacg             >  2:207627/1‑227 (MQ=255)                                                                                                                                                                                                                    ttGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCCCAAGTATTGGGATTGATTTTTTAGTttttttttttataga            >  2:651253/1‑224 (MQ=255)                                                                                                                                                                                                                            cc‑cTTCCATAACGCGTGAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTg     <  2:529892/227‑1 (MQ=255)                                                                                                                                                                                                                                 tCCATAACGCTGTAGCCACCAGAATAGATATTGCGGAACCACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAACTGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATg  >  1:323219/1‑227 (MQ=255)                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                 GCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTAT‑GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCAC‑CTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATG  >  NC_000913/2289887‑2290335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.