| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 846,743 | G→C | 13.4% | A126G (GCG→GGG) | glnP ← | glutamine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 846,743 | 0 | G | C | 13.4% | 176.9 / 3.2 | 77 | A126G (GCG→GGG) | glnP | glutamine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (32/33); new base C (6/6); total (38/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCACCAGGGTAATAATCAGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACTTCAATAAAGACCAGCGCGACGTGGTTGGCTATCCA > NC_000913/846506‑846975 | aGCACCAGGGTAATAATCAGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTGGAGAATGGTTTCCC‑AACGTGAAAGACCGAg‑cg > 2:754318/1‑238 (MQ=255) accgaaTAGACCTCCGCCCTGGCGCTCCAGATCTCAAGGGCCGGGAAGTTTCCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAATCAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACg < 2:252738/234‑1 (MQ=255) aGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGCCGTAGGGAATGGTTTCCC‑AACGTGAAAAACCAAG‑CCCCAGCCCTGCTTCaacaaa > 1:132722/1‑234 (MQ=255) aGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGGGCCAGCGGTAAAATGACGCAGCGAATGGTTTCCC‑AACGTGAAAAACCGAG‑CGACAGCCCTGCTTCACGaaa > 1:377434/1‑239 (MQ=255) gATAAAACCCCGCCACGGCGCCCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGaaa < 2:102857/238‑1 (MQ=255) aTAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACCATAAACAGCGAGGAGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGATTCCC‑ACCGCGAAAGACCGAG‑CGACAGTCCTGCTTCACGaaaa > 2:66234/1‑238 (MQ=255) aTAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATAAGACGCAGTGCCAGCGGGAAAATGACGTAGCGAATGGGTTCCC‑ACAGTGCAAAAACGAG‑GCGCACGCCTGGTTCACGcaaa > 1:57223/1‑238 (MQ=255) gAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACCCAGTGCCCGCGGTAAAATGACGGAGCGAAAGGTTTCCC‑AACGTGATAAACCGGC‑CCCCAGTCCTGCTTCACGAAAACCtt > 2:750038/1‑239 (MQ=255) aaCACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGCCACCATACGCCCCCGTGCCAGCGGTAAAATTACGTAGCGAATGGTTTCCC‑AACTCGAAAGACCCAC‑CCCCAGTCCTGCTTCCCGAAACACttt > 1:442546/1‑239 (MQ=255) cccccACGGGCCTCCAGATCTCAAGGGCGCGGAATTTACCGGCAATAAGTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTgg < 1:401914/236‑1 (MQ=255) gCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGCCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGAt > 2:623162/1‑239 (MQ=255) gCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGGAAAATGACGTAGCGAATGGTTTCCC‑AACGGGAAAGACCGAG‑CGCCAGTCCGGCTTCACGAAAAACTTTGTGGaa > 1:172931/1‑238 (MQ=255) ccgccgcCCCAGATTCCAAGGGCGGGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGa < 1:844933/235‑1 (MQ=255) ccgccccccccgttctcTAGGGGGCCGAAGTTCCCGGAAATATGTTCCTGCCCCTGACGGGTCTGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGa < 1:750038/226‑1 (MQ=255) cTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGGGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGGGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCCCGAAAACCTTTGTGGGTAGACAc‑ca > 2:89565/1‑238 (MQ=255) ggtctcAGGGGCGCGGAAGTTCCCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAg‑caccgcac < 1:106935/237‑1 (MQ=255) gATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGGCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAg‑caccgcac < 1:106957/239‑1 (MQ=255) ctcAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAT‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGAAAGACAG‑CACCGaacca > 2:728016/1‑238 (MQ=255) aaGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAATCCTGCTTCACGGAAAACTTTGTGGATAAACAA‑ACCCGCACCAcccg > 1:106124/1‑239 (MQ=255) aaGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGGTTCCC‑AACGGGAAAGACCGGG‑GGCCAGTCCTGCTTCCCGAAAAACTTTTTGGATaaaaaaacccacaccccccg > 1:443566/1‑220 (MQ=255) cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATTACGTAGCGAATGGTTTCCC‑AACGGGAAAGACCCAG‑CGCCAAGCCTCCCTCCCGAAAAACTTTGTGGATAAACAG‑ACCCCcaccaccccggat > 1:39440/1‑231 (MQ=255) cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTTTGGATAGACAG‑AACCGCACCACCCGTGAtt > 2:507811/1‑239 (MQ=255) cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCCAG‑CGCCAGTCCTGCTTCACGAAAAACTTTGTGGATAGACAG‑AAACACACCCCCCGTGAtt > 1:678575/1‑239 (MQ=255) cgcgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGATTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGAtt > 2:431905/1‑239 (MQ=255) cgcgGAAGTTACCGGAAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGAt < 2:240600/238‑1 (MQ=255) cgGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGATTCCC‑AACGTGAAAGACCGAG‑CGCCAGCACTGCTTCACGAAAACCTTTGTGGATAGACAG‑AAACGCCCCCCCCGTGAttt > 2:344054/1‑238 (MQ=255) cgGAAGTTACAGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGCATCCGGTCCACCGGTAAAATAACGTTGCGCATGGTGTCCC‑AACGTGAAAGACCGTG‑ACCCAGCCCCGATTCACGAACAACTTTGTGGAAAGACAc‑caacgccaccaacggagttt > 1:714378/1‑224 (MQ=255) ggAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTc < 2:39440/238‑1 (MQ=255) ggAAGTCACCGGCAATACTTTCCTGCCCCGTACGGGTCAGTTCCGACACGTCCATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTc < 2:282977/238‑1 (MQ=255) ccGGCAATAATTTCTTGCCCCGGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAAtata < 2:514059/239‑1 (MQ=255) cacaagtgctggCCCCGGGCGGGTCAGCTCCGCCCCGCGCATACAAATAAACGGCGAGGTTTCTTTAATGCCGTGGGTCCACTGGTTCACCAGCGGCGGCAGCATACGCCGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGAGAAAGACCTAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCTAGCGTGAGTTCCTCCATATACgtgc < 1:496652/228‑1 (MQ=255) aataatTTCTTGCCCCTGACGGGTCAGTTCCGCCAAGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACgcgc < 2:97803/239‑1 (MQ=255) ataatTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACgcgc < 2:377434/238‑1 (MQ=255) aaaatTTCTTGCCCTGGAAGGTTCAGTTCCGACCCGGCGATCCAAAAAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCCGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACgcgc < 1:28707/236‑1 (MQ=255) tttcttctctcttacggttttgTTCCGCCCCGCCCAACACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAg < 1:398000/218‑1 (MQ=255) tttCGTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAg < 2:252866/239‑1 (MQ=255) ttCTTGCCCCTGACGGGTCAGTTCCCACACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGt < 2:57223/239‑1 (MQ=255) tCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGtt < 2:132722/239‑1 (MQ=255) tCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGtt < 2:751675/239‑1 (MQ=255) gCCCCTGACGGGTCAGTTCCGCTACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCGCTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATc < 2:896491/239‑1 (MQ=255) ccccctccgggcacttttcGCCCCGCCGATCACAATAAACAGCGAGGTGTTTTTAATGCTGTTGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCa < 1:817453/221‑1 (MQ=255) ctggACGGGTCAGTTCCGCCCCGCCGATCACAATAAACAGGCAGGGGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGGAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCatg < 2:125358/236‑1 (MQ=255) tCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAA‑CACCGCACCACGCGTGATTTCCGCCAAATAAGCGCCGGAGTCGAGCaaataggggacc > 1:748109/1‑228 (MQ=255) aGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCACTATACGCCCCGGAGTTGGTCATGATGGGGacac > 2:328560/1‑236 (MQ=255) cacaACAAACAGCGAGGTGTCTTTAAGGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTCCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAACCCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGt < 2:167823/239‑1 (MQ=255) aaTAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACCCGTGATTTCCGCAAAATCAGCCCCGGGGTTGATCATGATGGGTACCACCCCCGCAGaaaaatgggcga > 1:774601/1‑231 (MQ=255) ccagacaggcaGGTGCCTTTAATCCGTATGAACCACGGGTTACCCAGCGGCGGCAGCATCCGACCCAGTGCCAGCGGTAAAATGACGTAGCAAATGGTTTCCC‑AACGGGAAAGCCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCg < 2:118485/227‑1 (MQ=255) aGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATgggcggaagcgaaa > 2:298464/1‑228 (MQ=255) tgtCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGGCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTgg < 2:846825/137‑1 (MQ=255) tgtCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGGCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTgg > 1:846825/1‑137 (MQ=255) tgtCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCCGTAAATGGGTCGATACGTAAGTCGTTa > 2:496132/1‑239 (MQ=255) tCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑ACCCGCACCACGCGGGATTTCCGCAAAATACGCGCCGGAGTTGATCCTGATGGTGACCACCCCCCCGGGAAATGGGCCGAGGGGTAAgacctgc > 1:118485/1‑231 (MQ=255) tgatgaTCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGAGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCCAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGGGGATAGACAT‑CACCGACCCCCGCGTGTTTTCCGCACTATACGCACCGCAGTTGACAATGAAGGGGACCACCCCGTCCGAAAATGGGCCGAGCCGTATGACGTAAAAAGCCacggga > 1:880637/1‑234 (MQ=255) ggattgccctggggTTCCCCAGGGGGGGCTGCATACGAGGCAGGGCCAGGGATAAAATGCGGTACGAAATTGTTTCCC‑AACGGGAAAGCCCGAG‑CCCAAGGCCGGCTTCACGAAAACCTTTGGGGATAGACAG‑CCCCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCgg < 1:507811/226‑1 (MQ=255) atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCCCGCGGGATTTCCGCAATATACGCGCCGGGGGTGATCATGAAGGGGACCACCCCCGCAGTAAAGGGGGCGAGGGGAAAGTCGTAAAAAGCCAACGGCAg > 1:499976/1‑239 (MQ=255) atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAg > 2:268221/1‑239 (MQ=255) atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAg > 2:576315/1‑239 (MQ=255) atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CAACGCACCACGCGTGATTTCCCCAATATACGCGCCGGAGTTGATCATGATGGTGACCAACGCCCCAGAAAAGGGGTCGAAGCGGAAGAGGTTAAACGCCCACGGCAg > 1:723937/1‑239 (MQ=255) atgatCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGAAAG‑CACCGCACCACGCGGGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACACCCGCCCCAGGAAAAGGGGCGAGGGGAAAATAGTAAAAAGCCACCGGGAg > 1:400779/1‑239 (MQ=255) cACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCA‑AACGTGAAAGCCCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGaa < 2:443566/239‑1 (MQ=255) tccccAGGGGCGGCAGCATCCGGCCCAGTCCCAGCTGTAAAATGGCGTAGGTAATGGTTACCC‑AACGTGAAAGACCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCCCCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGaaataaat < 2:499976/236‑1 (MQ=255) gcggcgGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGCTAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACAACCGCCGCAGGAAATGGGTCGATGCGTAAGTGCATAAACGCCATCGGCCGGGGGAAAAAAAAAAACacc > 1:605568/1‑237 (MQ=255) ggcggcAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCCATATACGCGCCGGCGTTGATCATGATGGGGACCACCGCCGCAGGAAATGGGTCGATGCGTAAGCCGTTAAAGCCCACCGGCAGGGCGAAAAAAAAAAACAtac > 1:426305/1‑236 (MQ=255) ggcggcAGCATAAGACCTAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGTG‑CGCCAGTCCTGCTTCACGACAACCTTTGTGGATAGACAG‑CACCGCACCGCGCGTGATTTCCGCACTATAACCGCCGGAGTTGATCATTATGGGGACCAACGCCGCAGGAAAAGGGTCGCTGCGTAAGCCGTTAAAGGGCATCGGCAGGGGGCAAAAAACAAAAACCAc > 1:765947/1‑239 (MQ=255) gcaTACGACGCAGGGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGCCCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CCCCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGgac < 2:748109/238‑1 (MQ=255) aTACGACGCAGGGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGgacg < 2:476537/237‑1 (MQ=255) tGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGAAAGGtgtg > 2:854076/1‑238 (MQ=255) tGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGAGGACCACGCCCGCCGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCCGGGCGAAATAAAAAAAAAATACCCGGGCGACGAAAggagggc > 1:382299/1‑234 (MQ=255) ggTAAAATGACGTAGGTAATGGTTTCCC‑ACCGTGAAAGACCGGG‑CGCCAGCCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTAATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 2:723937/239‑1 (MQ=255) gaaaaaTGACGTAGCCAATGGTTCCCC‑AACGTGAAAGCCCGAG‑CCCCAGTCCTGCTTCACGAAAACCTTTGGGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATCCGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 2:106124/236‑1 (MQ=255) gTAAAATGACGTTGGAGATTTTTCCCC‑AGCGGAAAAGACCGCG‑GCCCAGCCCTGTTTCCAGAAACCCTTTGGGGAAAGACAC‑ACCCGCCCCCGGCGGTATTTCCGCAATATACCGGCCGGAGTTGATCATGATGGTGCCCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 1:2389/238‑1 (MQ=255) aaaaTGCCGTAGCGAA‑GGTTTCCCAAACGGGAAAGCCCGGG‑CGCCAGTCCTGCTTCACGAAACCCTTTGGGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCa < 2:400779/238‑1 (MQ=255) aattgcttgagaaaTGGTTCCCA‑AACGGAAAAGCCGGGG‑CCCCATTCC‑GGTTTACGAAAAACCTTTTGGAAAAGCAGCCACCCGACCTCGCGTTATTCCCGCAATAGCCGCGCCGGAGTTGATCAGGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACtt < 1:702318/227‑1 (MQ=255) aaagcgtgggcgatgggTTTCCC‑AAC‑AGTAAGACCGGGCCGCCAGTCCGGCTCAACAAAAACTTGGGGGGAAAGACAG‑CACCGCACCACGCGTGATTTCAGCAAGACGCGGGCCGGGGTTGACCATGATGGTGACCGCCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACtt < 1:431905/224‑1 (MQ=255) aaTGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGTTGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGCACACGATTGGTGTGCCGCGGCACACtt > 2:803485/1‑239 (MQ=255) tAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACCATAGGTGTGCCGCGGATCACTTCAATaaa > 2:530238/1‑239 (MQ=255) gaaaaGCCCGAG‑CGCCAGTCCGGCTTCACGAAACCCTTTGTGGATAGACAG‑CCCCGCACCACGCGTGATTTCCGAAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGAt < 2:481332/205‑1 (MQ=255) ccGGG‑CGCCAGTCCTGTTACACGAAAACTTTTGTGGATAGACAG‑CGCCGCCCCGCGCGTGTTTTCCGCAATATACGCGCCGGAGTTGATCATGATGGGGACCCCCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACTTCAATAAAGACCAGCGCGACGTGGTTGGCTATCCa < 1:530238/239‑1 (MQ=255) | AGCACCAGGGTAATAATCAGATAGAACACCGCCACGGCGCTCCAGATCTCAAGGGCGCGGAAGTTACCGGCAATAATTTCTTGCCCCTGACGGGTCAGTTCCGCCACGCCGATCACAATAAACAGCGAGGTGTCTTTAATGCTGATGATCCACTGGTTACCCAGCGGCGGCAGCATACGACGCAGTGCCAGCGGTAAAATGACGTAGCGAATGGTTTCCC‑AACGTGAAAGACCGAG‑CGCCAGTCCTGCTTCACGAAAACCTTTGTGGATAGACAG‑CACCGCACCACGCGTGATTTCCGCAATATACGCGCCGGAGTTGATCATGATGGTGACCACCGCCGCAGTAAATGGGTCGATGCGTAAGTCGTTAAACGCCATCGGCAGGGCGAAATAAATAAACATCACCTGGACGACGATAGGTGTGCCGCGGATCACTTCAATAAAGACCAGCGCGACGTGGTTGGCTATCCA > NC_000913/846506‑846975 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |