| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,536,121 | G→C | 19.7% | R154R (CGC→CGG) | ompR ← | response regulator in two‑component regulatory system with EnvZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,536,121 | 0 | G | C | 19.7% | 93.9 / 3.1 | 55 | R154R (CGC→CGG) | ompR | response regulator in two‑component regulatory system with EnvZ |
| Reads supporting (aligned to +/- strand): ref base G (20/22); new base C (9/2); total (30/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.60e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.85e-01 | |||||||||||
AGACGTAGCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCA > NC_000913/3535889‑3536353 | aGACGTAGCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGCTGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCAACGCTGGCGAGCGGCATCGGCGC‑GTATTCCCCGAAc > 1:731566/1‑239 (MQ=255) tAGCCCAGACCCCAGACGGTCTGTATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGCGAGCGGCATCGGCTC‑GCCTTCCCCGAACActt > 1:528612/1‑238 (MQ=255) tAGCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCAGCTC‑GTCTTTGCGGGACATTTc > 1:89253/1‑239 (MQ=255) tAGCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGGGCCTTCAGT‑ACCGCAAACTCACCGCCGGGAAGCGGCATCGGCCC‑CGCTTCGCGGCACAATTc > 2:688300/1‑239 (MQ=255) cccagcccccaggcGGGCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTcgc < 1:30287/238‑1 (MQ=255) gaccccagacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGGGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCCCGGTCTTC‑CGGAAAAttttcctgct > 1:446044/1‑231 (MQ=255) accccagacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CGCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGATCGGCATCGGCTC‑GTCTTTGCCGAGCATTTcgc‑g‑cgga > 1:756489/1‑236 (MQ=255) agacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGCGCGGCATCGGCCC‑CGCGTCCCGGGACAATTCAC‑G‑CGGCCCGAgg > 1:675065/1‑239 (MQ=255) agacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCCCGGAAAATTTCGC‑G‑CGTACCGAgg > 1:568467/1‑239 (MQ=255) agacGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGCCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTTAGCGGCATCGGCTC‑GGCTTCGCCGGACATTTtgccccgtccgcgg > 1:25534/1‑228 (MQ=255) ggcggttggAATGTAAAGCGGGTGCGCTGGATTTTCTTCCCCCATGGGGCGCAGACGCGAAATCTGCCAGTGGATTGGGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGt < 2:232472/231‑1 (MQ=255) ggccggtttaagttAACCCGGGGGCGCTGGGTTTTCCTCCACCATGCGGCGCAGACGGGAAATCTGCCCGGCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGt < 2:609368/226‑1 (MQ=255) tcggagatgggtataagaggcagcgcTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGATCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGt < 1:462954/216‑1 (MQ=255) cGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGt < 1:514235/237‑1 (MQ=255) tCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GGCTTCCCGGAACATTTCTC‑G‑CGGACCGCGGGTAAGt > 1:237053/1‑239 (MQ=255) cTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑CTCTTTCCGGAACATTTTCC‑C‑CGTACCGCGGTTAAGtt > 1:542586/1‑239 (MQ=255) atttAACGTGGGTGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCAGGGCGATGGAGCGTTCCATTGCGGAAGATTGCCGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGaa < 2:260872/236‑1 (MQ=255) tgcaacgcggtcgctctgctccgtcttcCACCATGCGGCGCATACCAGAAACCTGCACGTCGATGGAGGTGTCCATTGGGTAATATTCACGACCACGGGCAAGGTTGATCAGCTTATCGGGGGAGAGCGG‑CGCACGCGGATGGCTGACCAGTGCCTTCAGT‑CCCGCAAACTCCCCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAAc < 2:532467/216‑1 (MQ=255) aCGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACAATTCGC‑C‑CGTACCGCGGTTACGTTTTGACttc > 1:225022/1‑237 (MQ=255) gATGCGCTGGATCTTCTTCCACCAGGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑Gaa < 1:245457/238‑1 (MQ=255) tcttctTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGGGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTTGCGGAAAATTTCCC‑G‑CGGACCGAGGTTAAGTTTTAACTTCCC‑GAAAGCAATTACCg > 1:683557/1‑238 (MQ=255) ccaTGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCCCCGGACATTTCGC‑GCCGAACAGA‑GTTAAGGTTGAACTTTCCGGAAAGC‑ATTACCGCCTCTTCCtcg > 1:667943/1‑237 (MQ=255) tGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACCTTTCCC‑G‑CGCACCGCGGGTTACTTTTAACTTTCC‑GAGAGCCATTACACCCCCTTcccttgcc > 1:38010/1‑233 (MQ=255) gcggctCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CGCACGCGGATGGCTGACACGTGCCTTCCGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑CGTTTCGCGGGACATTTCGC‑C‑CGCACCGCGGGTAAGATTAAACTTACA‑CAAACACAATACCGCCCCTTACtggacag > 2:323684/1‑234 (MQ=255) aaaTCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAAACTTTCCC‑G‑CGTACCCAGGGTACGt > 1:97779/1‑185 (MQ=255) tCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTcgc‑g‑c < 1:570932/167‑1 (MQ=255) cACGTCGATGGAGCGCTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGGGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTTGCGGGACATTTCCC‑G‑CGTACCGCGGTTAAGTTTGGCCTTACC‑CAAAGCAATTACCCCCCCTCCCTGCGTCGGTggccccgcccggtcgttc > 2:370841/1‑221 (MQ=255) tgATGGGGCTTTCCTTCGGGGAATATACGCCACCGCGGGAAGGTTTCCTCAGCTTACCGGGGTAGGGCGC‑CCCGCGCGGAGGGCTGACCGGGGCC‑TCAGTCACCCCAACCTCCCCTGTGGTGGGCGGCACCGGCTG‑TTCTTCGGGGACCATTCCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTCCC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTga < 2:237053/238‑1 (MQ=255) ctgtGGCGCTTTCCGTTGGGGAATATTCCCGCCCGCGGGCAAGGTCCATCAGCTTATCGGGGGAAGGCGG‑CTCACGGGGTGGGCGGACCAGGGCCTTCAGT‑CCCGCAAACCCACCGCTGGTGGGCGGCCGCGGCCT‑GTCTTCGCGGAACTTTTCGC‑C‑CGTACCGGGGTTAAGTTTGAACTTCCC‑GAAACCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTga < 2:446044/236‑1 (MQ=255) tGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑C‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGGTCGTTCGCCCgacg > 1:587357/1‑238 (MQ=255) ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCCAGGGTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTTCTGTGACGGTGCGCCCGGCAGATCGTTCGCCTGACGGCgcagc > 1:68651/1‑238 (MQ=255) ttCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCAAGGGTAAGTTTGAAATTACC‑GAAAGCAATTACCGCCCCTTCCTGTGACGGGGCGCCTGGCAGTTCGTTTGCCTgccgaacacga > 1:583620/1‑232 (MQ=255) tGCGGAATATTCACGCCCCCGGGCAAGGTTCATCAGCTTAGCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGGGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCAc < 1:7093/239‑1 (MQ=255) tttttccctcccccggcaaaGGTTCACCCTCTTATCGCGGG‑GGGCGGCCCCCCGCGGGTGGCTACCCAGTGCCTTCAGT‑CCCGCAACCCCCCCGCTGGTGAGCGGCACCGGCCC‑GTTTTCCCGTACCATTTCGC‑G‑CGTACCGAGTTTAGGTTTCACCTTCCC‑GAACGAAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATa < 2:68651/220‑1 (MQ=255) gACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCCCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGGTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACCGGGCGCCTGGCACTTCGTTCCCCTTACGACGCCCCACCCCCCGGCAACCGGccccc > 1:211509/1‑236 (MQ=255) atccGCTTATCGGGGGAGGGCGG‑CTCACGCGGGTGGTCGACCAGTGCCTTCAGT‑CCCGCAAACTCACCGCGGGGGAGCGGCAGCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTaaa < 1:570641/239‑1 (MQ=255) cTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTTGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTTAACTTACC‑GAAAGCAATTACCGCCTCTTCCTTTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCCCGGATACGGGCCAGCCG‑TTTCCGCGGGGTACACGGtt > 1:731042/1‑239 (MQ=255) ttATCGGGGAAGGGCGG‑CCCCCGGTGATGGCTGCCCAGTGCCTTCAGT‑ACCGAAACCCCACCGCTGGTGAGCGGCATCGGCTC‑GTCTCCGCGGAACATTGCGC‑G‑CGTACCGGGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGttt < 1:598678/239‑1 (MQ=255) taaTCGCGGGAGCGCGG‑TCCACGCGGATGGCTGACCGGTCCCTTCATT‑ACCGCAAACTCACCGGTGGTGAGCGGTATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGtt < 1:832323/236‑1 (MQ=255) cgcgGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGGTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGGGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCCGCACCGCCCGGGTACGGGCCAGCAG‑TTCCCCCCGGGTAAACGGTTTTggg > 1:546816/1‑238 (MQ=255) tgttgtaaaagacacgaGT‑CCCGCAACCCCCCCGGTGTGGGGCGGCCTCGGCTC‑‑TCCTCCGGGGACAGTTCCCGG‑CGGACCGGTTTTAAGTTTGAACTCACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCa < 2:562484/223‑1 (MQ=255) agtcccgaaacccccccGTTGGTGGGCGGCACCGGCTC‑GTCTCCGCGTAACTTTCCGG‑G‑CGTACCGAGGTTAAGTTTGAACTTCCC‑GAAAGAAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTc < 1:370841/224‑1 (MQ=255) aCCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGGACATTTCGC‑G‑CGGACCGAGGGTAAGTTTGGACTTACC‑GGAAGCAATTACCGCCTCTTCCTGGTACGGTGCGCCTGGCAGGTCGTTTGCCCTACGCCGCAGCACCCCCCGGGTACGGGCCAGCAG‑GTTCCGCGGGTTAAAACGTTTTGGGATGTAGTGGGCAACCCCCAACACCACGCCTACAAAAAGGTcccc > 2:25205/1‑237 (MQ=255) cAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACCCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAAAGTAGTCGTCAGCGCCAATCTCCCGGCCTACGATACGGTCCAcctct > 1:17840/1‑239 (MQ=255) tCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCCATTACCGCCTCTTCCCTTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCCCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGGTTTGGAATGTAGTCGTCAGCGCCAACCTCCAGGCCCACGATActgcttcttttacaca > 1:562484/1‑223 (MQ=255) ccGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGGACATTTCGC‑C‑CGTACCCGGGGTAAGTTTTGACTTACC‑CCAAGCAATTACCCCCCCTTCCCTTTGCGGGGCCCCGTGCAGTTCGTTCGCCCGCTGCCCCCGCACCCCACGCGTCCGGGCGCGCAGTTTCCCGCGGGTACAAGCGTTTTGG‑ATGGTCTTGTCCACGCCCATCCCCCGGCCTCCGTAACGGGCCACTCTTTCCCCtt > 2:346148/1‑238 (MQ=255) tgggTGAGCGCAACTGGCTC‑GTTGTCGCGGAACTTTTCGC‑G‑GGTCCCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGc < 1:444608/237‑1 (MQ=255) ggaggggtctgggaccttcctCGCGGAACTTTGCGC‑G‑CGTACCGGGGTTAAGTTGAAATTTACC‑AAAAGAATTTGCCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGt < 1:198062/218‑1 (MQ=255) agcggcagcggcTC‑GGTTTCGGGGAACTTTTCGC‑C‑GCAACGGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCa < 1:611833/238‑1 (MQ=255) aGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTAcc < 2:777832/41‑1 (MQ=255) aGCGGCATCGGCTC‑GTCTTCCCGGAACATTTCGC‑G‑CGTAcc > 1:777832/1‑41 (MQ=255) cGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTAACGAGGTTAAGTTTTAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGGGCGCCTGGCAGTTCGTTCGCCTGACGACCCAGCACCCCACGGGTAAGGGCCAGCAG‑TTCACGCGGGGTAAACGGGTTTGGAATGTAGACGTCAGCGCCACACTCCAGGCCTACCATACGGGCCCATTCTTCCCCCTTCCCCCCCAccc > 2:884916/1‑238 (MQ=255) gCTC‑GTCTGCACGAAAGTTTCCGG‑G‑GGTCCGGAGTTAAAGTTTGAACTTAGC‑AAAGGAAATTACCGGCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGAt < 1:785536/238‑1 (MQ=255) gTCTCCGCGGAACTTTTCGG‑G‑CGTACCGAGTTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCa < 1:688300/239‑1 (MQ=255) tCTTGGCGAAAATTTTCGC‑G‑CGTCCGGAGTTTAAGTTTGAACTTACC‑GAAAGAAATCACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCa < 1:38838/238‑1 (MQ=255) | AGACGTAGCCCAGACCCCAGACGGTCTGAATGTAACGCGGATGCGCTGGATCTTCTTCCACCATGCGGCGCAGACGCGAAATCTGCACGTCGATGGAGCGTTCCATTGCGGAATATTCACGACCACGGGCAAGGTTCATCAGCTTATCGCGGGAGAGCGG‑CTCACGCGGATGGCTGACCAGTGCCTTCAGT‑ACCGCAAACTCACCGCTGGTGAGCGGCATCGGCTC‑GTCTTCGCGGAACATTTCGC‑G‑CGTACCGAGGTTAAGTTTGAACTTACC‑GAAAGCAATTACCGCCTCTTCCTGTGACGGTGCGCCTGGCAGTTCGTTCGCCTGACGACGCAGCACCGCACGGATACGGGCCAGCAG‑TTCACGCGGGTTAAACGGTTTTGGAATGTAGTCGTCAGCGCCAATCTCCAGGCCTACGATACGGTCCACTTCTTCCCCTTTCGCCGTCACCATAATGATCGGCA > NC_000913/3535889‑3536353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |