| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,555,917 | T→C | 9.3% | T311A (ACC→GCC) | rtcA ← | RNA 3'‑terminal phosphate cyclase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,555,917 | 0 | T | C | 9.3% | 224.8 / 3.2 | 79 | T311A (ACC→GCC) | rtcA | RNA 3'‑terminal phosphate cyclase |
| Reads supporting (aligned to +/- strand): ref base T (39/31); new base C (2/6); total (41/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
AAAACGCATATCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG > NC_000913/3555684‑3556153 | aaacacaatatcgcaaaTCGGTGTCAGAAAACCGGGGTGGGCCATTGCAAGGATGGGGTAAAACTCGCCCAGGAATTGGAGAAGATGGTGGGGTACGGGGTGTAAGTTTAGCCGGATAACGGGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTGACCCGCGGTACGGCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTcagca < 2:1049299/224‑1 (MQ=255)aaaaCGCATTACCGCAATCTTTATCAGAAACTCGGGGTGGCCCATCGCCAGGATGCGGGACAACACGGCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTcagca < 2:610547/239‑1 (MQ=255) aaCGAATATCCGCAATCGGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGa < 1:910213/239‑1 (MQ=255) aCGCATATCCGCAATCTGGATCAGAAACCCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGAt < 1:612183/239‑1 (MQ=255) cATATCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAAATCTCTGCATCATTCAATGCTTACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAAACGCACCGGCAAGAAACGCCCCCACACCCCGGAATTGGTCAGCCAATgg > 1:90761/1‑238 (MQ=255) tagccGCAATCTGTATCAGAAACTCGGCGGGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCAt < 1:311915/236‑1 (MQ=255) taccGCAACTTGTTACAGAAACTCGGGGGGGCCCATCGCCAGGATGGGGGACAACACGCCCAGCAATTGCTGAAGAGGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATg < 2:1100047/237‑1 (MQ=255) atCCGCAATCTGTATCAGAAACTCGGGGTGGCCCAGCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAGCGCGCCAGATCCGGCTTACATCTCGGCATCATTCAATGCTCGCCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATg < 1:90356/239‑1 (MQ=255) ttttttCAAAAACTCGGCGTGGCCCATTGCCGGGTAGGGGTACAACACGCCCAGCAAGTGCTGAAGATGATGGGGTACGGCGTGTAAGGTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATggg < 2:644035/234‑1 (MQ=255) cTGTATCAGAAACTCGGCGTGGCCCATCGGCAGGATGCGGTACAACACGCCCAGCAATTGCTGGAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGTCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATggg < 1:1220199/239‑1 (MQ=255) gTATCAGAAACTCGGCGTGGCCCCTCGCCAGGATGGGGTACAACACGACCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑Cg < 2:761172/239‑1 (MQ=255) gTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTATCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCCCACCCGCGTTACGCCATC‑TGGTTCTATCAAACTAAACCGCACCGCCAAGAAACGCCCCCACACCGCGAAATTGGTCAGCAGATGGCATGAGGGAgggggg > 1:644035/1‑237 (MQ=255) acAGAACCGCGGCGTGGCCCATCGCCAGGATGCGGTACACCACGCCCTGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGAcc < 1:300489/238‑1 (MQ=255) tCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCCGGAAACGCGCCAGATCCGGCTTTCATCTCTGGACCATTCAATGCTCAACCGCGTTACGCCCAC‑TGTTTCTATCAAACTAAACCCCACCCGCCAGAAACACCCCCCCCCCCGGCCATTGGCCACAGGAAGGGATGAGGGAGGGG‑CGAcacaaaaat > 2:460337/1‑230 (MQ=255) tCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGGTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCCCGATATTGGTCAGCAGATGGCATGAGGGGTGGG‑CGACCGTAAAtt > 1:775727/1‑238 (MQ=255) ggggTGGCCCGTCGCCAGGATGGGGTACAACGCGCCCAGCAATTGCTGAAGATGTTGGGTTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTccc < 2:90761/236‑1 (MQ=255) ggATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCAACCCGATATTGGTCAGCAGATGGCATGAGGGATTGG‑CGACCGTAAATTCCCCCGcgcccccccccgc > 1:1048052/1‑233 (MQ=255) cacGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTTTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGGTATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGGAAATTCCCCCCCCCCCGCCACCGCCACCGGAAggcccc > 1:1205198/1‑234 (MQ=255) ccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTgg > 1:217310/1‑239 (MQ=255) cagccttttgttgagattgtgGGGTTCGGGGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCCCCCGCGTTACGCCATC‑TGTTTCTATCAAACTAACCCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGt < 2:775727/220‑1 (MQ=255) cAGCAATTGGTGAAGGTGGTGGGGAACGGCGTGAAAGTTTAGCCGGATAACGGCCCAGATCCGGCTTAACTCTCTGCATCATTCAATGCTCCCCCGCGTTACGCCATC‑TTTTTCTATCAAACTAACCCGAACCGGCAAGAAACGCTCCACCCCCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGt < 2:1049442/239‑1 (MQ=255) cAGCAATTGCTGAAGGTGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCCCTGCATCATTCAATGCTCCCCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGt < 1:348997/239‑1 (MQ=255) cAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGt < 1:584611/239‑1 (MQ=255) aaTTGCGGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGc < 1:1066208/239‑1 (MQ=255) aggtgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATAtt < 1:113846/235‑1 (MQ=255) gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGc < 1:1148984/215‑1 (MQ=255) tACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCCGTTGGTCAGCAAGATATTCCCCCAccgcc > 1:1030998/1‑238 (MQ=255) ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCCCCACCACCCCGATATTGGTCAGCCGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCCTCCGTAGAACCAGTTGGGCAGCAAAATATCcccccccccccccc > 2:1164752/1‑238 (MQ=255) cGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGGTACGCCATC‑TGTTTCTATCCAACTAAACCGCACCGGCAAAAAACGCTCCACCACCCCGGTATTGGTCAACCGATGGCCTAAGGGGTGGG‑GGGCCCGAAATTCCCCCCCGCCCCCCCACCCCCCCGGGAGCACCAGTTGGTCACCCAAATATTCCCCCCcccccgcccg > 2:86912/1‑236 (MQ=255) tgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACCTCTCTGCATCATTCAATGCTCACCCGCGTTACCCCATC‑TGTTTCTATCAAACTAAACCCCACCGGCCAGAAACGCCCCCCCCCCCCGGTATTGGTCAACAGATGGCATGAGGGATGGG‑CGGCCGTACATTCCCCCGCCCCCGCCAGCGCCCACGGGAGCACCCATTGGTCAGCAAGATATTCCCCCCCCGCCCCCGTCCt > 2:991981/1‑239 (MQ=255) tgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGAAGGG‑CGACCGTAAATTCCCCCGCGCCCCCCAGCGCCATCGGTAGCACCAGTTGGGCAGCAAGAAATTCCCCCCccccccccgg > 2:858128/1‑235 (MQ=255) tgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCCCCCCCACCCCGAAATTGGTCAGCCGATGGCATGAGGGATGGG‑CGGCCGTAAATTCCCCCGCCCCCGCCAGCCCCCCCCCAAGCCCCCGTTGGGCAGCAAAAAATTCCCCCAcccccccccg > 2:331625/1‑234 (MQ=255) tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGCG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCCCCGTGCTTGCCAggg > 1:90142/1‑238 (MQ=255) gCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCAt > 2:1202136/1‑137 (MQ=255) gCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCAt < 1:1202136/137‑1 (MQ=255) gCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGGACTTGCCAggaa > 1:483589/1‑236 (MQ=255) cccccccagtcccGGTTTACATCTCGACATCATTCAAGCCTCCCCCGGTTTACCCAATC‑TGTTTCTATCAAACTAACCCGCACCGGAAAGAAACGCCCCCCCACCGCGATATTGGCCAGCAGAGGGCAGGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCAc < 2:1100400/228‑1 (MQ=255) cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCa > 1:1100400/1‑237 (MQ=255) ccagtgtCCGGTTTTCATTTCTCTCTCATTCAATGCTACCCCGGTTTCCGCCATC‑TGTTTCTAACAAACTAAACCGCACCGGAAAGAAACGCTCCCCCACCGCGATATTGGCCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACctct < 2:590952/233‑1 (MQ=255) gCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCTCCGTGCTTGCCAGGCAGCGTTTCACCTCTTTCACCa > 1:1134942/1‑236 (MQ=255) ttACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGAAGCGTTTCACCTCTTTCACCa > 1:1306080/1‑234 (MQ=255) aCATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCACCAAGATATTCCCCCACCGCCCCCGGGCTTGCCCGGAAGCGTTTCACCGCTTTCACAAACtggg > 2:386847/1‑236 (MQ=255) cATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGCCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGGGCTTGCCAGGCAGCGTTTCACCTCTTTCACCAAcc > 1:590952/1‑233 (MQ=255) ctGCATCATTCAATGCCCCCCCGCGTTACGCCATC‑TGTTTCTATCAAACTAACCCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAac < 1:331625/239‑1 (MQ=255) acgcctttttcattccccccccGCGTT‑CCCCATCTTTTTTCTATCAAACCAACCCGCACCGGAAAGAACGGCCCCACCCCCGGAGTTTGGGCCAGCAGATGGCAGGGGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAac < 2:33497/220‑1 (MQ=255) tGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAac > 1:1014819/1‑238 (MQ=255) ttCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGcc < 1:71732/139‑1 (MQ=255) ttCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGcc > 2:71732/1‑139 (MQ=255) ttCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTcc < 1:1281219/172‑1 (MQ=255) ttCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTcc > 2:1281219/1‑172 (MQ=255) ttCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTTCCAGGTAGCGTTTCACCTCTTTCCCCAACTGGGCCGCAACCCCCTCg > 1:1347462/1‑238 (MQ=255) tGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCCCGGCAcc > 1:33497/1‑237 (MQ=255) tGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGCAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTg > 1:667968/1‑239 (MQ=255) tGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGAAGCGTTTCACCCCTTTCACCAACTGTGCCGCAACCCCCTCGGCCCt > 1:1079745/1‑238 (MQ=255) ccccccccctttcccccctC‑TTTTTCTAACAAACAAACCCGCACCGGAAAGAAACGTTCCCCCACCCGGATTTTTGTCAGCAAATGGCTTGAGGGATGGG‑CGACCGTAAATCCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGAc < 2:1014819/221‑1 (MQ=255) aCCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCa > 1:1334195/1‑139 (MQ=255) aCCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCAGCAACCACCTCGGCACTGCcgcg > 1:948114/1‑239 (MQ=255) ttACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGCCCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCACCCACCTCGGCACTGACGCGCcttcc > 1:158711/1‑236 (MQ=255) cGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGGCCGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCTCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCAcc > 1:4128/1‑239 (MQ=255) cccctttttttCTATCAAACCAAACCCACCCGGCAAAAAACGCCCCCCCCCCGCGTTTGTGGTCGACAGATGGCATGAGGGGTGGG‑GGCCCGAAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACcga < 2:1205198/231‑1 (MQ=255) ataaaaCTAAACCGCACCGGCAAGAAACGCTCCACCGCCGGGATATTGGTCAGGAGATGGCATGAGGGATGGG‑CGTCCGTAAATTCCCCCGCGCCCGCCAGCGCCTTCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCg < 1:414669/236‑1 (MQ=255) tCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCg > 1:702668/1‑238 (MQ=255) aaacctaccccccccccgCAAGAACCGCCCCCCCCCCTGGATATGGGCCAGCAGATGGCATGGGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGtt < 2:1030998/222‑1 (MQ=255) aCTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAACCGTTCgg > 1:1262867/1‑239 (MQ=255) cTAACCCGCCCCGGAAAAAAACGCCACCCCCCCGCGAGAGTGGTCGCCGGAGGGCATGGGGGTGGGG‑CGACCGGAAATGCCCCCCCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGt < 2:483589/239‑1 (MQ=255) cTAAACCGCACCGGAAAGAAACGCTCCACCCCCGGGATATTGGCCAGCAGATGGCAGGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGt < 1:628929/239‑1 (MQ=255) aaCCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGCTGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCAGCCGTGCTTGCCAGGTAGCGTTTCACC‑CCTTCACCAACTGTACCGCAACCACCCCGGCACTTACGCGCTTTTCCCCCGCGCAAACAAAGCGTTCGGTGaaa > 1:609728/1‑237 (MQ=255) aCCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCCCGGCCCTGACGCGCTTTTAACCGACGACAAAAAACCGTTCGGGGata > 1:695169/1‑239 (MQ=255) cGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCCCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCACCTTCGCCCCAACCCCCTCGGCACTAACCCGCTTTTCACCCACCGCCACAAAGCATCCGTTGAACTTTTCaa > 2:295844/1‑238 (MQ=255) cTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGCCGACAAAAAAGCGTTCGGGGACATTTTCACTTTCGCCTTCaa > 1:1349849/1‑239 (MQ=255) cccccccccGCGATATCGGGCAGCAGATGGCATGAGGGATGGT‑CAACCGCAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAg < 1:452917/232‑1 (MQ=255) cccccGCGATATTGGTCAGCAGATGGCATGAGGGATGGC‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCgag < 1:86912/236‑1 (MQ=255) ccgcgcgATAGTGGTCAGCAGATGGCAGGGGGGGTGGG‑CGGCCGTAAATCCCCCCCCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCgaga < 1:991981/236‑1 (MQ=255) cccgccattatTGGTCATGAGTTGGCATGAGGGATGGC‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCgaga < 1:460337/231‑1 (MQ=255) cgATTTTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTa < 1:858128/239‑1 (MQ=255) cgATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGGGACGGTa > 1:573854/1‑239 (MQ=255) ttGGCCAGAGGATGGCATGGGGGAGGGG‑CACCCGTAAATTCCCCCCGGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTAcc < 1:766871/239‑1 (MQ=255) gTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGCCGACAAAAAAGCGTTCGGGGATATTTTCACTTTCGACTTCAACCGGACCGGAATAACCCg > 2:98192/1‑238 (MQ=255) gTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGATACGGTATTACCCg > 1:33400/1‑238 (MQ=255) | AAAACGCATATCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATC‑TGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTCAGCAGATGGCATGAGGGATGGG‑CGACCGTAAATTCCCCCGCGCCCGCCAGCGCCATCGGTAGCACCAGTTGGTCAGCAAGATATTCCCCCACCGCCGCCGTGCTTGCCAGGTAGCGTTTCACCTCTTTCACCAACTGTGCCGCAACCACCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCG > NC_000913/3555684‑3556153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |