| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,776,305 | A→C | 11.5% | H130P (CAC→CCC) | yfjX → | CP4‑57 prophage, putative antirestriction protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,776,305 | 0 | A | C | 11.5% | 194.7 / 2.1 | 80 | H130P (CAC→CCC) | yfjX | CP4‑57 prophage, putative antirestriction protein |
| Reads supporting (aligned to +/- strand): ref base A (40/29); new base C (2/9); total (42/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.12e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTCGCCTGGATGGACCGCTTCTGTGATGAGTACTGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG > NC_000913/2776067‑2776543 | tttgCCTGGGTGGACCGTTTTTGGGATGGGTACTGGGGGGGTG‑TCTGGTCCTTTTACCCGCTCAGCAATGGCGGAGGTTTTATGGCTCCGGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCa < 2:539488/236‑1 (MQ=255)ttCGCCTGGATGGACCGCTTCTGGGATGAGTACTGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCa < 1:661691/239‑1 (MQ=255) ccTGGATGGACCGCTTCTGTGATGAGTACTGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCCCAAAGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGGAGCCGCAGGA‑AGCGC‑TGTCTGCCTGATTGAATATAGCCAGCCAGCCTGCCTCACCGAAAGCGATGCCATGAC‑GGAGCACTAt > 1:1080696/1‑239 (MQ=255) aCCGCTTCTGTGATGAGTACTGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATAGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATTGTGCGGGAATG‑AGCGCGGAAGCCGCAGGG‑ATCGC‑GTTCTGCCTGGTTGAAAATAGCCATCACGCCGGCCCCACCCAATGCGATTCCCTTAC‑GGGAAACCATTAccccgt > 2:419749/1‑234 (MQ=255) agttttgtataagggccggcgggggggTATTTTGGCCCTTTTCCCCGCCCAAGAAGGGCGGGGCGTGTGTGGCCCCTGGTGTTGA‑GGGTGACGATAAAGGGCGTTGGCTCAGCGGCATGAATGGCACTGGTGCGGAAAGG‑AGCGGGGAAGCCGCAGGA‑ATCGT‑TGTCTGCCTGATGGAATATAGCCATCCCGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTg < 2:572364/217‑1 (MQ=255) ttgtgtgttcggggggggTT‑TTTGGTCCTTTTACCCGCTCAGAAATGGGGGGGGTTTTAGGGCTCCGGATGCTGG‑CGGGGACGAAAAATGGCTTTTGCTCAACGGCATGAATGGCAATGGTGCGAAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACg < 2:664269/226‑1 (MQ=255) ggatgccggggggtgTC‑TCTGGTCCTTTTACCCGCCAAGGAAGGGCGGGGGGTTTAGGGTCCCTGATGCTGA‑CGGTGGCGATAAGTGGCTTTGGCTCAACGGCATGGAGGGAAATGGGTCGGAAATG‑GGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCACCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGct < 2:519643/228‑1 (MQ=255) gaGTACTGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTAAGc > 1:852022/1‑236 (MQ=255) aGTACTGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCCTGAATGGGAATGGTGCGGAAATG‑GGCCCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGCTTGAATATAGCCATACAGCCCGCCTCACCGAATTCGAGGCCATGAC‑GGGGACCTATTACGCCCTCCGGGGTTACGccctc > 2:230645/1‑238 (MQ=255) tGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCCATGGTGCGGAAATG‑AGGGCGGAAGCCGCAGGG‑ATCGC‑TGTCTGCCTGATTGAATAAAGCCATCACGCCTCCCCCACCGAAGGCGATGCCCTGCG‑CGAGCACACTTACccccccggggttaaccccctgcaca > 2:891437/1‑217 (MQ=255) cGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGGGCGGGAATG‑AGCGCGGAAGCCGCAGGG‑ATCGC‑TGTCTGCCTGATTGAAAATAGCCATACAGCCTGCCCCACCGCATGCGATGCCATTAC‑GGGGCACCATTACCCCCCGCGGGAATACGCCCCGCAacac > 2:901875/1‑238 (MQ=255) gtgtttttGGTTCTTTTACCCGCTCAGAAAGGGGGGGGGGTTTAGGGCTCCTGGTGCGGG‑GGGTGGAGAAAAAGGGCATTTGCCAAACGGAATGAATGGCAATGGGGGGGAAATG‑GGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCt < 2:352663/231‑1 (MQ=255) gTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGG‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACCATTACCCCCTGCGGGATTACGCTCTGCACAACCCCGaa > 2:980815/1‑239 (MQ=255) tCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGGACTATTTCCCCCTGCGGGATTACg > 1:572364/1‑219 (MQ=255) tCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGGTTACGCTCTGCAGCACCCTGAATc > 1:253788/1‑238 (MQ=255) tCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGG‑AACGC‑TGTCTGCCTGATTGAATATAGCCCTCACGCCTGCCTCACCGAATGCCATGCCATGAC‑GGGGCCCCTTTACCCCCTCCGGGATTCCGCTCTGCACCACCCCGAAAcc > 2:27541/1‑239 (MQ=255) ttgTCCTTTATCCCGCTCAGCATGGGGGGGGGTTTTAGGGCTCATGGTG‑TGAGGGGGGCCGAAAAAGGGCTTTGCCTAAACGGAAGGAATGGAAAGGGGGGGGAAAGG‑ACCGGGGAAGCCGGAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAg < 2:991986/237‑1 (MQ=255) gTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAgcg < 1:25143/239‑1 (MQ=255) tCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGGGAGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCCACGGGACTACGCCTTGCAGCACCCTGGATCCAgcg > 1:202743/1‑238 (MQ=255) tttACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGGGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGCTTACGCTCTGCAGCACCCTGAATCCAACGCCCtt > 1:38061/1‑239 (MQ=255) ttACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGGGCGGAAATG‑AGCGCGGAAGCCGCAGGA‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACCCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGAACTATTAcc > 1:913817/1‑194 (MQ=255) tCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGGTGCCATGAC‑GGAGAACTATTTCCGCCTGCGGGCTTAACCCCTCCACCCCCCCGAAACCGACGCCCTTATggcccta > 2:857273/1‑233 (MQ=255) cAGCAATGGCGGGGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGAATGAATGGCAATGGTGCGGAAAGG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCatta < 1:118004/239‑1 (MQ=255) aaggaaTGGCGGGGCTTTTAGGGCTCCTGATGCTGA‑CGGGGACGATAAAGGGCATTTGCTCAACGGCATGAATGGAAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCatta < 1:729691/235‑1 (MQ=255) tGGGGGGGCGTTTATGGCCCCTGATGCGGA‑CGGTAACGATAAATGGCATTTGCTCAAGGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCCCCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGAtt < 1:857273/239‑1 (MQ=255) gAGCGTTTATGGCTCCTGATGCTGA‑CGGGGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGACTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGAACTATAACCCCCTGCGGGATTACGCCCTGCAGCCCCCCGAATCCAGCCCCATTATGGCCattatttgataaggg > 2:758399/1‑230 (MQ=255) tttATGGCTCCGTGTGCTGC‑CGGTGACGATAAAGGGCATTTGCTCAACGGCATGAATGGAAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTTTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACt < 1:672129/238‑1 (MQ=255) tttATGGCTCCGGATGCTGA‑CGGGTACGATAAAGGGCTTTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCCCCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACt < 1:891437/238‑1 (MQ=255) tGGCTCTTGAGGGTTA‑GGGTGACGATAAATGGCTTTTGCTAAACGGCATGAATGGCAATGGTGCGGAAATG‑GGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTTATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCatga < 1:336831/239‑1 (MQ=255) gcTGATGCTGA‑GGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAAGG‑GGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCCCGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGaa < 1:351001/238‑1 (MQ=255) cTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTCCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTCTGCGCATTATTTATTAAGGGAACCCAAGATGGaaa > 2:3627/1‑238 (MQ=255) cTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTCCGGGATTACGCCTTGCAGCCCCCTGAATCCAGCCCCATTTTGCGCCTTTTTGATTAAGGaaaacactaatgaaaa > 2:68548/1‑224 (MQ=255) gCTGA‑CGGTGACGAAAAATGGCATTGGCCCAACGGCATGAAGGGCAATGGTGCGGAAATG‑GGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCCCGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACt < 1:601224/223‑1 (MQ=255) cTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCGGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAA‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGAAGCCCCCTGAATCCAGCGCCCTTATCCGCCTTATTGATTAAGGAAACTCATGATGGAACAGtaa > 2:24632/1‑236 (MQ=255) gagggTGACGATAAATGGCATTTGCTAAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTc < 1:27541/236‑1 (MQ=255) ggTGACGATAATTGGTATGTGCCCAACGGGTGAAATGGCAAGGGTGGGAAAATG‑AGCCCGGACGCCGGCGGT‑AACGC‑TGTCGGCCTGATTGAATATAGCCAACCCGCCTGCCTCCCCGAATGCGATGCCATGGC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCAt < 2:38061/238‑1 (MQ=255) aCGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCAATATGCGCATTTTTGATTAAGGAAACTCATGATGGAAccggtctcttataaac > 2:601224/1‑224 (MQ=255) aaaaTGGCATTTGCCCAAGGGCATGAATGGCAATGGGGCGGAAATG‑AGCGGGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCCCCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGa < 1:758399/237‑1 (MQ=255) aTGGCATTGGCCCAACGGCTGGACGGGCAAGGGTGCTGAAATG‑AGCGCGGAAGCCGAAGGT‑ATGCC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCCCCGAATGCGATGCCAGGAC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACAcc < 1:1002310/239‑1 (MQ=255) ttttGCTCACGGGTATGAAT‑GCAATGGGGCCGAAAAGTGGCGGGGAAGCC‑CGGGTGATCGC‑TGTCTGCCGGTTTGATTATGGCCATCCCGCCAGCCTCACCGAATGCGGTGCCCGGGC‑GGAGCACTTTTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTAATGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGCCACCGGTa < 2:182166/237‑1 (MQ=255) aTTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGAt < 1:407891/191‑1 (MQ=255) aTTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGt > 1:292103/1‑237 (MQ=255) aTTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTAATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTTTTGAt > 2:407891/1‑191 (MQ=255) tttGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACGGAACCTCATCCCACAGACACCGGAAc > 1:1031109/1‑238 (MQ=255) aCGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATgc > 2:415947/1‑171 (MQ=255) aCGGCATGAATGGAAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATgc < 1:415947/171‑1 (MQ=255) aCGGAATGAATGGCAAGGGGGCGGAAATG‑AGCGCGGAAGCCGAAGGT‑ATCGC‑TGTCTGCCTGTTTGAATAGAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCTCTGa < 1:121851/239‑1 (MQ=255) cGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGa < 2:1041596/220‑1 (MQ=255) cGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGa > 1:1041596/1‑220 (MQ=255) aagggcaggggTGCGAAAATG‑GCCCGGGAGGCCGCAGGT‑‑TCGCGTGTCGGCCTGATTGAATAAAGCCATCACCCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGcaca < 1:368903/229‑1 (MQ=255) aTGGTGCGGAAAGG‑AGCGCGGAAGCCCCAGGT‑ATCGG‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACgg < 1:901875/239‑1 (MQ=255) gTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTAACTCATCCCACAGCAACCGTTACTTCCACTGACCCCACAAAGCACGGGaa > 2:708043/1‑239 (MQ=255) ggAAATG‑AGCGCGGAAGCCGCAGGT‑ACCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGTCACCGGTACTTCCACTGACCGCACAACGCACGGTAAAAcg < 1:418554/239‑1 (MQ=255) gAAATG‑GGCGCGGAAGCCGCAGGT‑ATCGG‑TGTCTGCCTGATTGAATATAGCCATCCCGCCTGCCTCCCCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAAcg < 1:68548/238‑1 (MQ=255) gAAATG‑GGCGCGGAAGCCGCAGGT‑A‑CGCTTGTCGTCCTGAATGAATATAGCCAGCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAAcg < 1:153985/238‑1 (MQ=255) gaatccgcccgccaaGCCGCGGGT‑ACCCC‑TGTCTGCCTGATTGAATAGAGCCATCCCGCCTGCCCTCCCGAATGCGATGCCAGGCC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAAcg < 2:1080696/225‑1 (MQ=255) tG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCCTGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGAACAACGCACGGTAAAACGCGCCt > 1:410728/1‑239 (MQ=255) aaGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCCCTCATCCCACAGACACCGGTa > 2:1028689/1‑193 (MQ=255) aaGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTa < 1:1028689/193‑1 (MQ=255) acccGCAGTT‑TGCGC‑TGTCTGCTTGATTAAATATCGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACgctgc < 1:1058759/236‑1 (MQ=255) cccgcgggttttcctttttGCCTGTTTGAATATGCCCACCCCCCCTGCCCCCCTGAATGGCTTCACATGAC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACgctgct < 2:1031109/220‑1 (MQ=255) tGCCTGATTGAATATAGCCATCACGCCTGCCTCACGGAATGCGATGCCATGAC‑GGAGCACTATTACAGCATGAGGGATTACGCTCTGCAGAACCCTCAATCCAGCGCCATTATGAGCATTATTGATTAAGGATACTCATGATGGAACAGTCAATCACCACACAGACACAGGTACTTCAACCGACCGCACAAGGCACGGTAAAACGAGCCTTAACACTGCTTGACGTACACCTGCCCGaa > 1:78435/1‑239 (MQ=255) tGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGaa > 1:964827/1‑239 (MQ=255) tatgGCCATCCCCCCTGCCCCACCGAATGGGTTGCCA‑GACGGGAGCCCTTTTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCa < 2:292103/239‑1 (MQ=255) tggCCATCACGCCTGCCTCCCCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCAtt < 1:980815/237‑1 (MQ=255) aaGCCACCCCGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCAtt < 1:230645/238‑1 (MQ=255) cctcccgtctgcctCACCGAAGGCGGTGCCATGAC‑GGAGCCCTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCAcc < 1:21875/231‑1 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCCCTCATCCCACAGACACCGGTACTTCCACTGACCGCCCAAGCCACGGTACAACCCGCCTTAACGCTCCTTACCCGACACCGTCGCGAAAAAGGCGGGGCATTCACCTc > 2:443715/1‑239 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCAttaccct > 1:871763/1‑233 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCt > 1:711513/1‑238 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACCCTCCTTGACCCACACCT‑CCCCAAAAAAGCGGGGGATTCACcccc > 2:459908/1‑239 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTAATTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTCCGCGAAACAGGCGTGGCATTCACCt > 1:1043283/1‑238 (MQ=255) tCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAACGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACACACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCCGCGCGAAAAAGGAGGGGCATGCAccc > 2:463724/1‑237 (MQ=255) cACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCCCGGGAAAACCAGCCTTACCCCGGGTTACCCGAAACCTGCGGCAAACAGACCGGGCTTTCCCCTc > 2:606303/1‑238 (MQ=255) cctCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCCCGAAACAGGCGTGGCATTCACCCCCACCCAg > 2:428596/1‑237 (MQ=255) cctCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACGGACCGCCCAACGCACGGTCAAACCCGCCTTAACCCTGCTTGACCGAAACCTCCGCGACAAAGACTGGCCATTAACCTCCACCCAggt > 1:1055030/1‑238 (MQ=255) tGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAAAGCTGCTTGACCGACCCCTGCGCGAAACAGGCGGGGCATTCACCTCCACTCAGGCCGCCCGGGAc > 2:506109/1‑239 (MQ=255) cccttgcgggAGCACTTTTTCCGCCTGCGGGATTTCGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACCCCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGgctg < 2:253788/231‑1 (MQ=255) gCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAAcgcg < 1:784525/151‑1 (MQ=255) gCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAAcgcg > 2:784525/1‑151 (MQ=255) gCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGGGGCATTCCCCCCCCCCCAGCCTGCCCGGGACTGgctagaacggaaaaa > 2:294101/1‑227 (MQ=255) cACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACgctgct > 1:215885/1‑163 (MQ=255) aCTTTTACCGGCTGCGGGATTACCCTCTGCAGCACCCTGAATCCCGCCCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATgg < 1:599883/239‑1 (MQ=255) | TTCGCCTGGATGGACCGCTTCTGTGATGAGTACTGCGGGGGTA‑TCTGGTCCTTTTACACGCTCAGCAATGGCGGAGCGTTTATGGCTCCTGATGCTGA‑CGGTGACGATAAATGGCATTTGCTCAACGGCATGAATGGCAATGGTGCGGAAATG‑AGCGCGGAAGCCGCAGGT‑ATCGC‑TGTCTGCCTGATTGAATATAGCCATCACGCCTGCCTCACCGAATGCGATGCCATGAC‑GGAGCACTATTACCGCCTGCGGGATTACGCTCTGCAGCACCCTGAATCCAGCGCCATTATGCGCATTATTGATTAAGGATACTCATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCTGCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG > NC_000913/2776067‑2776543 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |